Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 0.0e+00 1943.3 1189 100.0
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 0.0e+00 1461.8 1203 75.8
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 0.0e+00 1420.6 1225 77.8
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 0.0e+00 1408.7 1216 75.7
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 0.0e+00 1340.9 1207 67.2
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 0.0e+00 1315.1 1208 74.1
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 0.0e+00 1292.7 1208 73.4
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 0.0e+00 1262.7 1209 71.4
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 0.0e+00 1255.7 1209 73.5
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 0.0e+00 1233.4 1209 70.3
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 0.0e+00 1122.8 1033 70.0
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 5.0e-251 872.1 1247 57.7
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 7.2e-250 868.2 1229 56.6
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 2.7e-249 866.3 1270 56.5
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.2e-234 815.8 1250 51.6
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 5.5e-234 815.5 1300 52.6
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 7.2e-234 815.1 1212 54.3
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 9.1e-229 798.1 1207 53.2
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 5.5e-226 788.9 1240 54.0
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 7.2e-226 788.5 1256 52.8
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 6.7e-224 781.9 1241 52.4
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.8e-221 773.9 1234 51.5
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.7e-219 767.3 1247 48.4
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 3.2e-218 763.1 1022 55.3
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 1.0e-211 741.5 1238 48.9
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 4.0e-208 729.6 1202 48.5
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 3.7e-206 723.0 1241 50.9
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.3e-203 714.5 1251 48.8
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 7.3e-202 708.8 1262 50.6
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.5e-199 701.0 969 48.6
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 1.4e-197 694.5 1252 50.2
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 1.2e-188 664.8 1247 49.3
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 2.0e-188 664.1 1078 44.2
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 1.1e-186 658.3 1245 50.0
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 3.6e-185 653.3 1223 46.9
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.0e-183 647.5 1247 48.9
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.6e-183 647.1 1247 48.9
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.5e-180 636.7 1251 46.5
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 7.3e-178 629.0 1253 46.6
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 1.6e-177 627.9 1251 43.2
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 1.5e-175 621.3 1218 45.1
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.4e-173 614.0 1244 46.8
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.3e-170 603.2 1248 47.8
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 5.6e-170 602.8 1301 46.0
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 2.8e-169 600.5 1223 44.3
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-167 594.7 1245 47.1
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 1.1e-165 588.6 1213 44.9
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 9.3e-165 585.5 1317 38.8
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 2.6e-159 567.4 1234 40.3
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 2.3e-155 554.3 1137 46.4
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 1.9e-154 551.2 1186 44.7
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 4.3e-154 550.1 1153 46.1
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 1.6e-153 548.1 1235 43.7
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.8e-152 544.7 1243 38.7
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 1.2e-151 542.0 1215 43.0
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 7.1e-149 532.7 1240 42.4
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 9.6e-146 522.3 1219 40.9
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 4.6e-140 503.4 1229 39.7
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 9.7e-138 495.7 1232 41.2
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 5.3e-136 490.0 1260 39.1
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 6.9e-136 489.6 1136 36.8
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 7.6e-135 486.1 1222 42.4
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 3.2e-133 480.7 1286 35.9
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 1.1e-130 472.2 1238 43.8
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 9.7e-130 469.2 1298 35.4
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 8.2e-129 466.1 1243 36.4
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 1.1e-128 465.7 1282 34.2
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.5e-127 461.8 1266 38.9
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.6e-124 451.8 805 39.5
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.1e-122 445.7 1144 34.9
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 2.0e-122 444.9 1070 46.4
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 5.3e-120 436.8 1272 40.1
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 2.0e-119 434.9 1293 37.1
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 3.4e-119 434.1 823 36.6
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 3.0e-115 421.0 1257 38.7
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 3.3e-114 417.5 1342 32.4
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 3.7e-113 414.1 1040 39.6
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 4.8e-113 413.7 1264 38.1
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.0e-110 406.0 1239 35.3
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.3e-110 405.6 1266 36.9
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 6.5e-110 403.3 1343 36.2
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.9e-109 401.7 1257 39.7
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 3.3e-106 391.0 818 35.2
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 9.7e-106 389.4 1239 34.6
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.2e-102 378.3 1099 40.4
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 2.5e-101 374.8 820 35.5
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 7.5e-98 363.2 1372 35.6
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.1e-96 359.4 733 36.4
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.4e-96 359.0 1302 38.8
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.1e-96 357.8 709 35.8
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 6.5e-94 350.1 1123 38.0
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.1e-93 349.4 816 35.2
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 1.8e-91 342.0 768 35.8
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 6.8e-91 340.1 1067 32.3
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 4.4e-90 337.4 843 35.0
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.3e-89 335.9 789 34.1
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 3.5e-87 327.8 1302 33.9
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 7.8e-87 326.6 785 34.8
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 1.0e-86 326.2 1329 33.0
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.0e-86 326.2 703 35.8
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 2.9e-86 324.7 1051 33.3
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 2.9e-86 324.7 698 36.4
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 1.5e-85 322.4 1067 32.0
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.2e-84 319.3 813 33.3
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 2.8e-84 318.2 1185 36.3
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 4.7e-84 317.4 1020 40.8
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 6.1e-84 317.0 612 37.6
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 1.4e-83 315.8 1183 36.3
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 5.2e-83 313.9 609 36.6
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 4.4e-82 310.8 825 32.4
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 9.8e-82 309.7 1091 37.9
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 4.9e-81 307.4 796 35.3
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.8e-80 305.4 663 35.6
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.4e-80 305.1 1074 33.7
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 7.0e-80 303.5 1134 39.4
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 2.0e-79 302.0 465 42.6
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 7.8e-79 300.1 827 32.6
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.3e-78 299.3 1349 33.0
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.7e-78 298.9 1033 37.7
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 3.6e-76 291.2 1312 35.3
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.8e-74 283.9 800 32.1
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.1e-69 269.6 1355 34.0
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.5e-66 259.2 819 29.9
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 4.4e-66 257.7 907 29.1
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.7e-65 255.8 1363 29.9
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 3.7e-65 254.6 1303 27.3
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 8.3e-65 253.4 1072 35.1
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.1e-63 248.8 1168 34.4
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.1e-63 248.8 1168 34.4
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 3.5e-63 248.1 819 31.1
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 3.6e-60 238.0 1260 29.8
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 5.8e-58 230.7 778 29.7
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 6.0e-55 220.7 819 30.3
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.8e-51 209.1 1388 31.3
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 1.3e-49 203.0 420 34.8
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 3.8e-49 201.4 1251 32.2
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 3.8e-49 201.4 612 30.6
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 9.3e-48 196.8 631 31.1
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 6.0e-47 194.1 868 31.2
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-45 189.9 809 28.9
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 1.5e-45 189.5 668 29.5
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.7e-41 176.0 586 31.4
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.1e-39 169.1 618 30.3
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.1e-37 163.3 700 30.1
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 3.7e-36 158.3 647 27.8
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 1.1e-35 156.8 630 27.6
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 2.6e-34 152.1 573 28.4
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 8.4e-33 147.1 1196 28.8
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 7.9e-31 140.6 649 26.5
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.5e-29 136.3 556 27.5
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 4.3e-29 134.8 408 29.4
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 1.8e-27 129.4 541 26.4
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.2e-24 118.6 539 32.8
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.2e-18 100.1 322 29.2
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 5.9e-18 97.8 756 23.0
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 3.8e-17 95.1 100 61.0
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 1.4e-16 93.2 1100 29.5
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.4e-16 93.2 108 60.2
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.5e-13 83.2 407 25.1
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 2.0e-10 72.8 134 40.3
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 2.0e-10 72.8 134 40.3
SHI02386 Sapria himalayana HOM05D003962 ORTHO05D004714 7.7e-10 70.9 82 51.2
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 2.9e-09 68.9 643 25.8
BcaC08g45378 Brassica carinata HOM05D003962 ORTHO05D032564 1.4e-08 66.6 108 44.4
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.7e-07 62.4 308 28.6
Thecc.03G197000 Theobroma cacao HOM05D000896 ORTHO05D000594 6.7e-06 57.8 38 68.4


User provided reference genes

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