Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 6.7e-204 714.1 462 100.0
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 2.0e-171 606.3 509 83.3
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.0e-167 594.0 530 72.8
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.0e-161 571.2 506 78.3
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.9e-160 568.2 506 77.7
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 1.2e-157 560.5 461 80.0
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.2e-156 555.1 538 68.6
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.3e-150 534.6 459 78.0
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.1e-148 529.3 459 77.6
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-147 527.3 513 74.5
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.4e-147 525.8 511 74.6
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.1e-145 518.1 528 72.3
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.6e-144 515.4 457 76.1
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 9.9e-139 497.7 510 68.2
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.4e-137 493.0 522 65.3
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 3.0e-135 486.1 525 69.7
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.3e-134 482.3 525 70.1
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 6.2e-133 478.4 535 68.0
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 1.8e-132 476.9 429 70.2
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 1.5e-131 473.8 538 66.9
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 7.6e-131 471.5 464 65.5
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 2.2e-130 469.9 528 64.2
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 2.9e-130 469.5 482 68.7
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 6.4e-130 468.4 508 66.7
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 8.4e-130 468.0 454 65.0
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.4e-129 467.2 469 64.2
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.4e-129 467.2 469 68.0
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 1.4e-129 467.2 464 64.7
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 1.2e-128 464.2 523 62.3
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 1.2e-128 464.2 467 66.0
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 2.1e-128 463.4 467 64.2
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 3.5e-128 462.6 444 70.9
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 6.0e-128 461.8 453 69.5
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 1.7e-127 460.3 469 67.6
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 5.1e-127 458.8 540 62.6
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 1.5e-126 457.2 471 64.1
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 3.3e-126 456.1 477 67.9
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 5.6e-126 455.3 475 68.6
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 7.3e-126 454.9 510 63.5
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 7.3e-126 454.9 504 63.3
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.6e-125 453.8 473 69.1
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 2.1e-125 453.4 477 66.9
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 2.1e-125 453.4 467 64.5
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 8.1e-125 451.4 468 67.3
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 8.1e-125 451.4 448 64.5
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 3.1e-124 449.5 478 63.2
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 3.1e-124 449.5 469 63.5
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 9.0e-124 448.0 466 68.0
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.5e-123 447.2 465 65.6
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 1.5e-123 447.2 467 66.6
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.5e-123 447.2 472 61.4
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 2.0e-123 446.8 528 61.7
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 2.0e-123 446.8 465 66.7
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 3.4e-123 446.0 390 76.9
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 3.4e-123 446.0 515 63.3
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 5.8e-123 445.3 470 61.3
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 9.9e-123 444.5 481 55.9
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.7e-122 443.7 436 69.7
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.7e-122 443.7 478 62.6
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 1.7e-122 443.7 461 68.3
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.9e-122 443.0 477 65.2
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 2.9e-122 443.0 479 64.5
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 3.8e-122 442.6 473 66.2
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 4.9e-122 442.2 532 62.6
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 6.4e-122 441.8 460 68.5
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.1e-121 441.0 467 66.8
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.1e-121 441.0 467 66.8
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.9e-121 440.3 451 69.0
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 2.4e-121 439.9 463 61.1
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 3.2e-121 439.5 469 66.1
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.2e-121 439.1 478 65.1
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 5.4e-121 438.7 458 66.6
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.2e-120 437.6 427 67.0
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 2.1e-120 436.8 466 66.1
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 2.1e-120 436.8 470 60.6
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.5e-120 436.0 478 61.3
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 6.0e-120 435.3 485 65.8
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 7.9e-120 434.9 467 65.5
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.0e-119 434.5 462 66.5
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 2.3e-119 433.3 465 63.0
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 3.9e-119 432.6 470 66.2
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 5.1e-119 432.2 404 67.3
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.1e-118 431.0 450 67.3
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.1e-118 431.0 450 67.3
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 1.5e-118 430.6 426 65.0
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.5e-118 429.9 519 63.4
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 9.6e-118 427.9 477 56.0
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 8.1e-117 424.9 466 65.5
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 9.9e-115 417.9 530 50.8
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 9.9e-115 417.9 484 68.2
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 2.2e-114 416.8 464 59.9
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 2.1e-112 410.2 468 59.8
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 7.9e-112 408.3 493 57.2
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 1.0e-111 407.9 518 59.5
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 7.4e-110 401.7 464 65.1
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.1e-109 400.2 469 64.0
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 2.8e-109 399.8 481 60.7
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 2.6e-107 393.3 381 64.6
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 7.6e-107 391.7 402 62.4
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 2.9e-106 389.8 451 58.8
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 3.8e-106 389.4 473 57.7
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 3.8e-106 389.4 539 48.1
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 1.4e-105 387.5 430 60.2
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 3.5e-104 382.9 457 56.7
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 2.5e-102 376.7 451 57.9
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 1.6e-101 374.0 363 60.9
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 5.3e-100 369.0 422 65.2
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 6.9e-100 368.6 414 65.2
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.1e-97 361.3 399 65.4
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 5.7e-94 349.0 464 59.3
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 2.6e-91 340.1 408 65.7
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 4.5e-91 339.3 435 55.4
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 2.2e-90 337.0 516 53.7
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 3.6e-88 329.7 411 57.2
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 1.8e-87 327.4 460 47.0
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.0e-86 323.9 419 60.6
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 1.7e-85 320.9 389 59.1
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 1.9e-81 307.4 397 59.4
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 4.7e-72 276.2 329 56.5
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 1.8e-71 274.2 391 53.7
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.2e-71 272.7 339 57.2
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 3.1e-68 263.5 337 45.7
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.7e-66 257.7 460 47.4
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 3.8e-66 256.5 335 65.7
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.2e-65 253.1 415 49.2
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 3.6e-64 250.0 344 61.3
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.7e-62 242.7 154 77.9
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 1.3e-58 231.5 241 54.4
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 6.5e-58 229.2 601 38.4
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.6e-58 228.8 141 80.1
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 1.5e-57 228.0 474 42.8
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.2e-57 226.5 141 79.4
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.2e-56 224.9 141 78.7
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 4.7e-56 223.0 279 45.9
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 2.3e-50 204.1 226 77.4
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.0e-50 203.0 170 64.7
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-49 201.1 134 73.9
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.3e-49 200.3 134 73.9
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.9e-42 176.8 171 57.9
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.9e-42 176.8 128 71.1
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 3.2e-36 157.1 153 57.5
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.2e-28 130.6 74 83.8
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 6.6e-26 122.9 72 77.8
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 2.5e-25 120.9 91 67.0
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 3.3e-25 120.6 131 51.9
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 5.1e-18 96.7 55 83.6
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 2.8e-16 90.9 58 72.4
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.4e-12 78.6 55 78.2
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 2.4e-12 77.8 459 22.0
QL02p028181 Quercus lobata HOM05D004623 ORTHO05D005100 1.8e-07 61.6 63 57.1
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 4.0e-07 60.5 68 51.5
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 6.9e-07 59.7 215 25.1
Lsat_1_v5_gn_9_31241 Lactuca sativa HOM05D000436 ORTHO05D000678 4.5e-06 57.0 35 68.6


User provided reference genes

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