Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 6.7e-99 364.0 182 100.0
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 4.8e-97 357.8 182 98.9
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 5.9e-95 350.9 182 96.2
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 5.9e-95 350.9 182 96.2
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 1.3e-94 349.7 182 95.6
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.9e-94 348.6 182 95.6
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.9e-93 345.9 175 98.3
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 1.9e-93 345.9 181 94.5
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.9e-93 345.9 181 94.5
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 2.5e-93 345.5 182 94.5
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 2.5e-93 345.5 182 93.4
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 4.2e-93 344.7 182 94.0
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 4.2e-93 344.7 182 94.5
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.2e-92 343.2 182 92.9
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 1.6e-92 342.8 182 92.3
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 2.1e-92 342.4 182 94.0
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 3.6e-92 341.7 182 93.4
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.7e-92 341.3 182 92.3
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 7.9e-92 340.5 182 93.4
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 7.9e-92 340.5 182 92.9
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 7.9e-92 340.5 182 91.8
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.0e-91 340.1 182 93.4
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 1.0e-91 340.1 182 92.3
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.0e-91 340.1 182 91.2
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.4e-91 339.7 182 91.8
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 3.0e-91 338.6 182 90.1
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 3.9e-91 338.2 182 91.2
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 5.1e-91 337.8 182 92.9
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 6.7e-91 337.4 182 90.7
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 6.7e-91 337.4 182 91.2
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 6.7e-91 337.4 182 91.8
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 6.7e-91 337.4 182 92.3
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 6.7e-91 337.4 182 91.2
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 8.8e-91 337.0 182 90.7
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.1e-90 336.7 182 91.2
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.1e-90 336.7 182 91.2
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 1.5e-90 336.3 182 92.9
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 2.0e-90 335.9 182 91.8
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.6e-90 335.5 182 90.7
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.6e-90 335.5 182 90.7
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 3.3e-90 335.1 180 90.6
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 3.3e-90 335.1 180 90.6
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 3.3e-90 335.1 180 90.6
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 3.3e-90 335.1 180 90.6
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 3.3e-90 335.1 180 90.6
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 3.3e-90 335.1 182 89.6
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 3.3e-90 335.1 182 92.3
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 4.4e-90 334.7 182 90.7
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 4.4e-90 334.7 182 90.7
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 5.7e-90 334.3 182 92.3
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 5.7e-90 334.3 182 92.3
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 5.7e-90 334.3 182 91.2
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 7.4e-90 334.0 182 89.6
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 7.4e-90 334.0 182 89.6
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.4e-90 334.0 182 90.7
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.4e-90 334.0 182 90.7
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 7.4e-90 334.0 182 90.1
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 9.7e-90 333.6 182 90.7
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.3e-89 333.2 182 90.7
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.7e-89 332.8 182 90.7
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 1.7e-89 332.8 182 90.1
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.7e-89 332.8 182 91.8
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.7e-89 332.8 179 91.1
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.7e-89 332.8 182 91.2
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 2.2e-89 332.4 182 89.0
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 2.2e-89 332.4 181 89.0
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 2.2e-89 332.4 179 91.6
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 2.8e-89 332.0 182 89.0
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 2.8e-89 332.0 182 89.0
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 2.8e-89 332.0 182 90.1
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 3.7e-89 331.6 182 91.2
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 3.7e-89 331.6 182 89.6
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 3.7e-89 331.6 182 90.7
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 4.8e-89 331.3 182 88.5
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 4.8e-89 331.3 180 89.4
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 4.8e-89 331.3 182 90.7
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 6.3e-89 330.9 182 89.0
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 6.3e-89 330.9 182 90.7
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 6.3e-89 330.9 182 89.0
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 6.3e-89 330.9 182 90.7
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 6.3e-89 330.9 182 89.0
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 6.3e-89 330.9 180 89.4
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.1e-88 330.1 182 89.0
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.1e-88 330.1 182 89.0
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 1.1e-88 330.1 182 90.1
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 1.4e-88 329.7 182 89.0
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.8e-88 329.3 182 88.5
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.8e-88 329.3 182 88.5
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 1.8e-88 329.3 182 89.6
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.8e-88 329.3 182 89.0
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 2.4e-88 328.9 182 88.5
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 4.1e-88 328.2 174 94.8
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 4.1e-88 328.2 182 90.7
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 5.3e-88 327.8 180 90.0
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 5.3e-88 327.8 182 87.9
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 7.0e-88 327.4 182 87.9
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 7.0e-88 327.4 182 89.0
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 9.1e-88 327.0 182 88.5
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.2e-87 326.6 182 87.9
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.2e-87 326.6 182 90.1
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 2.0e-87 325.9 182 88.5
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 2.0e-87 325.9 180 89.4
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 2.6e-87 325.5 180 88.3
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 5.9e-87 324.3 182 87.4
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 7.7e-87 323.9 180 88.3
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.0e-86 323.6 182 86.8
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 1.3e-86 323.2 182 86.8
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.3e-86 323.2 182 86.8
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 2.2e-86 322.4 182 87.9
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.2e-86 322.4 182 86.8
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 2.2e-86 322.4 180 87.8
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 3.8e-86 321.6 176 88.6
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 5.0e-86 321.2 180 88.3
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 8.5e-86 320.5 176 89.2
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.5e-85 318.9 182 86.8
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 5.5e-85 317.8 180 86.7
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 3.6e-84 315.1 180 86.7
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 4.7e-84 314.7 182 84.1
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 6.1e-84 314.3 178 86.5
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 6.1e-84 314.3 181 86.2
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 8.0e-84 313.9 182 84.6
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 3.0e-83 312.0 180 84.4
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 5.7e-82 307.8 179 87.2
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 9.7e-82 307.0 182 81.9
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 7.0e-80 300.8 195 80.5
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 2.0e-79 299.3 182 84.6
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 6.5e-78 294.3 182 82.4
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.8e-75 284.3 153 90.2
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.0e-74 282.7 182 74.2
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 4.4e-74 281.6 182 73.6
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.3e-73 280.0 179 81.0
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 1.7e-73 279.6 182 71.4
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 2.8e-73 278.9 151 89.4
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 6.3e-73 277.7 182 78.6
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.4e-72 276.6 153 87.6
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 1.4e-72 276.6 151 88.1
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 4.1e-72 275.0 152 90.1
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.2e-71 273.5 183 72.7
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 7.7e-71 270.8 143 91.6
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 2.3e-67 259.2 182 67.6
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 4.0e-67 258.5 173 76.3
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 7.7e-63 244.2 146 82.9
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 9.8e-58 227.3 182 71.4
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 5.0e-54 214.9 120 85.8
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.8e-52 209.1 188 62.2
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 2.0e-50 203.0 156 70.5
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 7.3e-45 184.5 158 63.3
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 4.7e-44 181.8 136 71.3
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 8.9e-43 177.6 177 58.8
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 1.3e-41 173.7 105 79.0
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 2.2e-41 172.9 105 79.0
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.1e-36 156.4 89 83.1
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 1.1e-35 154.1 96 77.1
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.4e-35 153.7 82 90.2
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 1.3e-25 120.6 66 90.9
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 1.3e-25 120.6 66 90.9
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 1.1e-24 117.5 170 41.2
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 4.2e-24 115.5 139 45.3
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.3e-22 109.8 143 48.3
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 9.9e-18 94.4 50 86.0
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 2.7e-15 86.3 158 39.9
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 3.9e-14 82.4 85 54.1
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 2.8e-12 76.3 92 47.8
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 4.0e-11 72.4 103 42.7
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.6e-10 69.7 110 40.9
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 3.4e-10 69.3 43 83.7
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 3.4e-10 69.3 232 27.6
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 9.3e-08 61.2 42 76.2
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 9.3e-08 61.2 34 82.4
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 6.7e-06 55.1 38 71.1


User provided reference genes

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