Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 1.2e-58 229.6 107 100.0
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 2.4e-56 221.9 107 95.3
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 8.6e-54 213.4 107 91.6
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.9e-53 212.2 107 91.6
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 7.3e-53 210.3 105 90.5
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 7.3e-53 210.3 107 90.7
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 7.3e-53 210.3 107 90.7
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.6e-52 209.1 107 89.7
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 6.2e-52 207.2 107 89.7
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.1e-51 206.5 107 89.7
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 4.7e-44 181.0 107 74.8
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.1e-43 178.3 106 72.6
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 5.2e-43 177.6 107 72.0
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 6.8e-43 177.2 107 72.9
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 8.9e-43 176.8 107 72.9
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.2e-42 176.4 107 72.9
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 2.0e-42 175.6 106 72.6
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.0e-42 175.6 107 72.0
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.6e-42 175.3 105 73.3
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 3.4e-42 174.9 107 70.1
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 70.1
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 70.1
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 70.1
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 70.1
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 70.1
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 70.1
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 70.1
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 70.1
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 70.1
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 5.8e-42 174.1 107 70.1
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 5.8e-42 174.1 107 70.1
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 5.8e-42 174.1 107 70.1
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 5.8e-42 174.1 107 71.0
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 5.8e-42 174.1 107 71.0
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 7.6e-42 173.7 107 69.2
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 7.6e-42 173.7 107 69.2
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 7.6e-42 173.7 105 72.4
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 9.9e-42 173.3 107 69.2
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 69.2
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 71.0
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 69.2
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 70.1
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 69.5
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 72.9
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.7e-41 172.6 107 71.0
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.7e-41 172.6 107 69.2
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.7e-41 172.6 107 69.2
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 2.2e-41 172.2 105 72.4
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 2.9e-41 171.8 104 70.2
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.9e-41 171.8 107 69.2
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 2.9e-41 171.8 107 72.9
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.9e-41 171.8 107 72.9
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.9e-41 171.8 107 72.9
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 4.9e-41 171.0 106 69.8
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 6.4e-41 170.6 106 71.7
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.4e-41 170.6 107 72.0
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.4e-41 170.6 107 72.0
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 8.4e-41 170.2 107 71.0
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 8.4e-41 170.2 107 70.1
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 8.4e-41 170.2 107 70.1
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.1e-40 169.9 107 68.2
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.4e-40 169.5 103 70.9
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.4e-40 169.5 107 72.0
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 1.4e-40 169.5 107 69.2
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.9e-40 169.1 103 70.9
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 1.9e-40 169.1 107 70.1
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 2.4e-40 168.7 107 70.1
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.2e-40 168.3 105 68.6
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 3.2e-40 168.3 107 70.1
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 3.2e-40 168.3 107 69.2
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.2e-40 168.3 107 70.1
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 4.1e-40 167.9 103 70.9
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 4.1e-40 167.9 107 69.2
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 4.1e-40 167.9 107 68.2
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 4.1e-40 167.9 107 69.2
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 5.4e-40 167.5 103 69.9
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 7.1e-40 167.2 107 67.3
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 7.1e-40 167.2 107 69.2
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 9.2e-40 166.8 107 69.2
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 9.2e-40 166.8 107 68.2
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 9.2e-40 166.8 105 69.5
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 9.2e-40 166.8 107 69.2
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.6e-39 166.0 107 67.3
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 1.6e-39 166.0 102 69.6
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 1.6e-39 166.0 102 69.6
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 1.6e-39 166.0 107 66.4
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.6e-39 166.0 106 68.9
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 2.1e-39 165.6 107 67.3
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 2.7e-39 165.2 105 68.6
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 3.5e-39 164.9 105 68.6
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 4.6e-39 164.5 105 69.5
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 4.6e-39 164.5 105 68.6
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 6.0e-39 164.1 105 69.5
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 6.0e-39 164.1 101 68.3
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 7.8e-39 163.7 107 67.3
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 7.8e-39 163.7 105 68.6
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 7.8e-39 163.7 103 69.9
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 7.8e-39 163.7 105 68.6
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.0e-38 163.3 104 66.3
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 1.0e-38 163.3 105 68.6
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.3e-38 162.9 103 69.9
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.3e-38 162.9 104 66.3
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.9e-38 161.4 107 65.4
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.9e-38 161.4 105 67.6
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.9e-38 161.4 107 66.4
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 3.9e-38 161.4 105 66.7
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 6.6e-38 160.6 104 66.3
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 6.6e-38 160.6 104 66.3
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 8.6e-38 160.2 107 67.3
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 8.6e-38 160.2 106 65.1
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.1e-37 159.8 107 64.5
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 1.5e-37 159.5 105 66.7
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.5e-37 159.5 101 65.3
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.5e-37 159.5 106 66.0
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.5e-37 159.5 107 65.4
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 1.9e-37 159.1 105 65.7
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.9e-37 159.1 105 66.7
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 5.6e-37 157.5 105 64.8
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 7.3e-37 157.1 104 65.4
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 9.6e-37 156.8 104 64.4
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 9.6e-37 156.8 104 64.4
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 2.1e-36 155.6 104 64.4
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.1e-36 155.6 104 63.5
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.8e-36 155.2 104 66.3
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.8e-36 155.2 107 63.6
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 4.7e-36 154.5 103 63.1
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 6.2e-36 154.1 98 66.3
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 6.2e-36 154.1 107 64.5
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 8.1e-36 153.7 98 67.3
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.4e-35 152.9 109 62.4
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 4.0e-35 151.4 98 65.3
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 3.4e-34 148.3 108 62.0
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 4.4e-34 147.9 105 62.9
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 4.4e-34 147.9 107 58.9
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.3e-33 146.4 103 62.1
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.8e-33 144.8 97 64.9
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 3.8e-33 144.8 105 59.0
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 4.9e-33 144.4 105 58.1
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 4.9e-33 144.4 102 60.8
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 6.4e-33 144.1 105 59.0
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 6.4e-33 144.1 104 61.5
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 6.4e-33 144.1 104 61.5
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 2.4e-32 142.1 89 68.5
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.2e-31 139.8 87 66.7
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.2e-31 139.8 106 57.5
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 8.7e-30 133.7 169 42.0
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.8e-28 128.6 99 57.6
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 6.2e-28 127.5 99 56.6
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 1.8e-27 125.9 85 64.7
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 2.4e-27 125.6 100 56.0
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.6e-26 122.1 103 54.4
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 4.5e-26 121.3 95 53.7
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 7.6e-26 120.6 80 65.0
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 1.3e-25 119.8 76 64.5
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 5.4e-24 114.4 72 62.5
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 1.8e-22 109.4 65 67.7
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 5.1e-22 107.8 95 45.3
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 1.1e-21 106.7 82 54.9
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 4.3e-21 104.8 68 67.6
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 3.1e-19 98.6 63 69.8
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 3.1e-19 98.6 67 65.7
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 3.1e-19 98.6 63 69.8
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 9.0e-19 97.1 92 43.5
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 3.8e-17 91.7 59 69.5
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 6.4e-17 90.9 92 44.6
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 8.4e-17 90.5 59 71.2
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 5.5e-16 87.8 67 59.7
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 1.2e-15 86.7 63 63.5
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 3.5e-15 85.1 55 70.9
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 6.0e-15 84.3 69 52.2
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.3e-14 83.2 50 72.0
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 6.7e-14 80.9 55 67.3
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.9e-13 79.3 51 68.6
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 1.4e-11 73.2 73 43.8
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 3.1e-11 72.0 44 65.9
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 4.0e-11 71.6 41 68.3
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 4.5e-10 68.2 106 35.8
Cre07.g333900 Chlamydomonas reinhardtii HOM05D004069 ORTHO05D004699 1.3e-06 56.6 94 27.7


User provided reference genes

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