Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 2.6e-116 422.9 213 100.0
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 1.1e-90 337.8 212 82.1
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 4.2e-82 309.3 213 75.1
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 1.8e-80 303.9 213 73.7
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 8.8e-80 301.6 213 72.8
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 8.5e-59 231.9 221 57.9
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 8.0e-49 198.7 174 62.1
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 1.5e-47 194.5 217 54.8
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 7.0e-45 185.7 199 52.3
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 1.6e-44 184.5 178 55.6
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 5.9e-44 182.6 179 54.7
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 5.9e-44 182.6 179 54.7
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 8.6e-43 178.7 217 49.3
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 1.5e-42 177.9 214 48.1
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 2.5e-42 177.2 178 56.2
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 2.3e-40 170.6 173 53.8
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 4.0e-40 169.9 227 45.8
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 8.9e-40 168.7 174 53.4
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 9.8e-39 165.2 173 50.3
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 2.9e-38 163.7 182 48.4
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 1.1e-37 161.8 179 50.8
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 1.8e-37 161.0 182 48.4
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 5.4e-37 159.5 182 50.5
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 2.7e-36 157.1 181 47.0
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 3.5e-36 156.8 159 52.8
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 3.3e-34 150.2 169 49.7
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 6.2e-33 146.0 110 63.6
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 1.5e-31 141.4 210 44.3
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 1.5e-31 141.4 175 47.4
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 2.6e-31 140.6 173 44.5
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 2.6e-31 140.6 143 55.2
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 4.4e-31 139.8 179 45.3
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 6.4e-30 136.0 179 46.4
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 1.1e-29 135.2 176 44.9
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 1.9e-29 134.4 185 44.3
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 3.2e-29 133.7 174 42.5
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 4.1e-29 133.3 148 45.9
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 4.1e-29 133.3 161 46.6
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 7.0e-29 132.5 181 45.3
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 3.5e-28 130.2 180 42.2
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 4.6e-28 129.8 146 47.3
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 1.3e-27 128.3 159 42.8
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 2.3e-27 127.5 127 52.0
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 2.3e-27 127.5 204 40.2
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 8.6e-27 125.6 159 42.8
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 8.6e-27 125.6 159 42.8
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 1.5e-26 124.8 186 39.2
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 1.5e-26 124.8 144 43.1
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 2.5e-26 124.0 143 46.2
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 3.3e-26 123.6 158 42.4
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 9.5e-26 122.1 180 42.8
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 2.8e-25 120.6 181 42.5
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 1.1e-24 118.6 148 41.9
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 1.1e-24 118.6 173 39.3
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 1.8e-24 117.9 174 42.0
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 2.3e-24 117.5 143 46.2
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 6.8e-24 115.9 146 43.2
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 1.2e-23 115.2 172 40.7
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 7.5e-23 112.5 176 39.2
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 2.2e-22 110.9 145 43.4
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 4.9e-22 109.8 149 38.3
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 6.4e-22 109.4 136 41.9
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 8.3e-22 109.0 165 39.4
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 3.2e-21 107.1 155 38.7
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 5.4e-21 106.3 148 43.2
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 7.1e-21 105.9 179 39.1
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 1.2e-20 105.1 149 42.3
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 3.5e-20 103.6 138 45.7
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 4.6e-20 103.2 152 38.2
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 1.0e-19 102.1 138 46.4
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 1.0e-19 102.1 147 40.8
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 1.7e-19 101.3 147 40.8
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 3.0e-19 100.5 148 44.6
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 5.1e-19 99.8 107 52.3
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 1.1e-18 98.6 133 42.1
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 4.3e-18 96.7 145 39.3
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 7.3e-18 95.9 132 47.0
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 1.6e-17 94.7 115 49.6
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 1.6e-17 94.7 115 49.6
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 8.1e-17 92.4 115 47.8
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 1.1e-16 92.0 132 45.5
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 6.8e-16 89.4 109 49.5
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 8.9e-16 89.0 129 42.6
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 1.2e-15 88.6 104 45.2
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 5.8e-15 86.3 161 39.1
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 3.8e-14 83.6 155 36.8
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 9.2e-13 79.0 158 33.5
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 1.2e-12 78.6 149 30.9
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 1.0e-11 75.5 135 31.1
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 1.3e-11 75.1 141 36.2
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 3.3e-10 70.5 101 41.6
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 5.6e-10 69.7 148 29.1
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 2.1e-09 67.8 69 50.7
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 3.6e-09 67.0 101 42.6
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 8.1e-09 65.9 101 41.6
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 8.1e-09 65.9 101 41.6
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 1.4e-08 65.1 94 42.6
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.4e-08 65.1 94 42.6
Nn2g14540 Nelumbo nucifera HOM05D007281 ORTHO05D009241 3.1e-08 63.9 70 41.4
Nn1g08105 Nelumbo nucifera HOM05D007281 ORTHO05D009241 2.2e-06 57.8 66 42.4
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 8.4e-06 55.8 124 29.8


User provided reference genes

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