Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 7.1e-94 347.4 200 100.0
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 8.7e-84 313.9 231 82.7
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.0e-55 220.7 244 62.3
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 1.3e-55 220.3 244 62.3
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 9.4e-54 214.2 243 61.3
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 2.7e-53 212.6 245 62.0
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 3.1e-41 172.6 185 62.7
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 7.8e-24 114.8 184 42.9
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 3.3e-22 109.4 191 39.3
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 9.5e-22 107.8 191 41.4
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 1.2e-21 107.5 194 40.7
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 1.4e-20 104.0 194 37.6
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 1.8e-20 103.6 188 38.3
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 2.3e-20 103.2 176 40.3
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 5.2e-20 102.1 187 37.4
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 1.2e-19 100.9 136 44.1
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 4.4e-19 99.0 133 48.1
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.3e-18 97.4 143 43.4
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 2.9e-18 96.3 132 45.5
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 6.4e-18 95.1 143 42.0
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 9.2e-17 91.3 137 40.1
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 1.2e-16 90.9 137 42.3
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 4.6e-16 89.0 171 40.4
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 3.0e-15 86.3 130 39.2
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 3.9e-15 85.9 139 40.3
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 1.1e-14 84.3 189 34.4
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 1.1e-14 84.3 130 38.5
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.3e-14 82.4 130 37.7
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.3e-14 81.6 143 36.4
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 7.3e-14 81.6 135 37.8
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 9.5e-14 81.3 144 34.0
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 9.5e-14 81.3 141 41.1
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 1.2e-13 80.9 191 33.0
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.8e-13 79.7 143 37.1
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.8e-13 79.7 141 36.2
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 3.6e-13 79.3 178 35.4
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 4.7e-13 79.0 137 36.5
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 6.2e-13 78.6 141 36.2
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 6.2e-13 78.6 137 36.5
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 6.2e-13 78.6 137 36.5
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 1.1e-12 77.8 151 37.1
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.1e-12 77.8 182 31.9
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 2.4e-12 76.6 145 33.1
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.4e-12 76.6 141 37.6
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.1e-12 76.3 139 33.1
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 5.2e-12 75.5 146 33.6
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 8.9e-12 74.7 208 33.2
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 8.9e-12 74.7 141 34.0
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 1.2e-11 74.3 143 32.9
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.0e-11 73.6 162 41.4
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 3.4e-11 72.8 160 38.8
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 4.4e-11 72.4 189 32.3
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 5.8e-11 72.0 149 40.3
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 9.9e-11 71.2 155 38.1
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 9.9e-11 71.2 141 35.5
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 2.9e-10 69.7 144 39.6
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 1.1e-09 67.8 140 35.0
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.9e-09 67.0 146 37.7
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 1.9e-09 67.0 187 33.7
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 3.2e-09 66.2 160 35.0
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 3.2e-09 66.2 133 38.3
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 4.1e-09 65.9 138 38.4
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 5.4e-09 65.5 190 34.2
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 7.1e-09 65.1 158 34.2
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 7.1e-09 65.1 158 34.2
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 7.1e-09 65.1 158 34.2
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 7.1e-09 65.1 158 34.2
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 7.1e-09 65.1 157 35.0
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.6e-08 63.9 139 34.5
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 2.7e-08 63.2 132 35.6
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 4.6e-08 62.4 45 60.0
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 4.6e-08 62.4 139 33.8
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 4.6e-08 62.4 139 33.8
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 6.0e-08 62.0 105 39.0
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 7.8e-08 61.6 132 36.4
Cpa.g.sc159.25 Carica papaya HOM05D005423 ORTHO05D006223 1.0e-07 61.2 83 42.2
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 1.0e-07 61.2 134 33.6
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 1.0e-07 61.2 160 36.2
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 1.3e-07 60.8 143 38.5
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 2.3e-07 60.1 139 33.1
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 2.3e-07 60.1 55 50.9
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 3.0e-07 59.7 110 38.2
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 3.0e-07 59.7 110 38.2
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 5.1e-07 58.9 43 60.5
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.9e-06 57.0 132 34.1


User provided reference genes

Program Settings