Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 8.7e-117 423.7 223 100.0
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 9.1e-82 307.4 239 72.8
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 1.5e-76 290.0 220 73.2
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 9.8e-76 287.3 185 81.6
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 6.3e-75 284.6 215 72.6
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 7.8e-65 251.1 191 72.8
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 4.1e-50 202.2 195 58.5
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 5.4e-50 201.8 213 56.3
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 9.2e-50 201.1 210 57.1
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 1.5e-47 193.7 207 58.5
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 4.3e-47 192.2 199 58.3
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 5.6e-47 191.8 228 55.7
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 1.6e-46 190.3 212 57.1
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 1.6e-46 190.3 207 57.0
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 2.1e-46 189.9 229 50.2
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 2.8e-46 189.5 192 62.0
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 3.6e-46 189.1 193 57.5
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 8.9e-45 184.5 212 55.7
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 2.0e-44 183.3 219 55.7
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 3.4e-44 182.6 202 51.5
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 4.4e-44 182.2 229 49.3
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 4.4e-44 182.2 184 58.7
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 4.4e-44 182.2 202 55.0
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 4.4e-44 182.2 199 54.3
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 7.6e-44 181.4 200 57.0
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 2.9e-43 179.5 227 50.7
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 6.4e-43 178.3 221 50.2
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 8.4e-43 177.9 193 57.5
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 1.4e-42 177.2 185 57.8
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 2.4e-42 176.4 190 54.2
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 3.2e-42 176.0 190 56.3
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 4.1e-42 175.6 217 50.2
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 9.2e-42 174.5 193 54.4
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 1.6e-41 173.7 164 62.8
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 2.1e-41 173.3 214 50.9
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 2.7e-41 172.9 194 53.1
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 2.7e-41 172.9 194 53.1
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 4.6e-41 172.2 186 59.1
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 7.8e-41 171.4 186 59.1
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 7.8e-41 171.4 211 51.2
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 1.3e-40 170.6 218 49.5
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 1.3e-40 170.6 214 51.4
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 2.3e-40 169.9 207 53.6
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 3.9e-40 169.1 211 51.2
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 1.1e-39 167.5 222 48.6
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.5e-39 167.2 221 48.0
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.5e-39 167.2 221 48.0
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 1.5e-39 167.2 191 52.4
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 1.9e-39 166.8 168 61.3
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.9e-39 166.8 207 48.8
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 2.5e-39 166.4 204 51.0
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 3.3e-39 166.0 184 55.4
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 4.3e-39 165.6 189 54.5
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 9.6e-39 164.5 218 52.3
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.2e-38 164.1 207 51.2
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 1.2e-38 164.1 189 54.5
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 2.8e-38 162.9 216 50.0
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 3.6e-38 162.5 212 50.9
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 4.7e-38 162.2 181 51.9
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 8.1e-38 161.4 211 46.9
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.4e-37 160.6 207 47.8
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 1.8e-37 160.2 205 50.2
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 1.8e-37 160.2 190 54.2
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 3.1e-37 159.5 194 52.6
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 3.1e-37 159.5 199 52.3
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 3.1e-37 159.5 208 50.0
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 4.0e-37 159.1 211 52.1
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 4.0e-37 159.1 208 48.6
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 5.2e-37 158.7 219 50.2
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 5.2e-37 158.7 190 55.3
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 5.2e-37 158.7 190 55.8
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 5.2e-37 158.7 180 53.3
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 6.9e-37 158.3 220 48.2
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 6.9e-37 158.3 186 54.3
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 6.9e-37 158.3 190 55.3
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 6.9e-37 158.3 201 48.8
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 8.9e-37 157.9 199 47.7
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 2.0e-36 156.8 207 45.9
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 3.4e-36 156.0 190 49.5
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 4.4e-36 155.6 190 54.2
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 5.8e-36 155.2 205 46.8
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 5.8e-36 155.2 240 44.6
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 5.8e-36 155.2 186 49.5
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 7.6e-36 154.8 230 44.3
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 9.9e-36 154.5 212 50.0
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 1.3e-35 154.1 199 46.7
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.7e-35 153.7 190 54.7
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 1.7e-35 153.7 185 53.0
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 2.9e-35 152.9 182 50.5
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 4.9e-35 152.1 214 46.3
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 8.4e-35 151.4 217 49.8
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 8.4e-35 151.4 214 45.3
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.9e-34 150.2 199 46.7
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 5.4e-34 148.7 216 44.4
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 7.1e-34 148.3 181 53.6
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 9.3e-34 147.9 203 46.3
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 2.1e-33 146.7 221 43.9
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 1.7e-32 143.7 198 45.5
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 1.7e-32 143.7 187 48.1
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 2.3e-32 143.3 193 48.2
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 2.3e-32 143.3 221 43.4
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 2.3e-32 143.3 167 52.7
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 3.0e-32 142.9 182 50.5
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 6.6e-32 141.7 216 47.2
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 6.6e-32 141.7 221 46.6
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 1.5e-31 140.6 197 43.1
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 5.6e-31 138.7 226 39.8
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 9.6e-31 137.9 262 40.1
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 8.1e-30 134.8 241 41.9
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 5.6e-23 112.1 189 43.4
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 9.0e-21 104.8 284 33.1
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 2.6e-20 103.2 224 40.6
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 1.9e-18 97.1 128 42.2
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 4.2e-18 95.9 179 39.7
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 2.7e-17 93.2 78 67.9
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 5.1e-16 89.0 87 55.2
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 3.3e-15 86.3 140 42.1
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 6.2e-14 82.0 113 47.8
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 1.2e-12 77.8 192 32.8
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.4e-10 70.9 56 64.3
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 2.3e-08 63.5 139 36.0
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 1.3e-06 57.8 69 47.8
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 8.2e-06 55.1 38 68.4


User provided reference genes

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