Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 5.2e-119 431.0 213 100.0
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 1.3e-106 389.8 224 88.4
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 7.6e-102 374.0 224 83.9
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 1.1e-100 370.2 224 83.5
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.3e-98 363.2 238 78.2
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.8e-96 355.5 238 76.9
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.3e-90 335.9 236 74.2
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 2.3e-90 335.9 236 74.2
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 7.4e-89 330.9 236 73.3
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 2.9e-85 318.9 216 76.9
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.9e-85 318.2 211 76.8
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 6.5e-85 317.8 221 74.7
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 1.9e-84 316.2 236 72.5
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 1.9e-84 316.2 238 69.3
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 2.5e-84 315.8 238 68.9
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 7.1e-84 314.3 220 73.2
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 9.3e-84 313.9 221 72.9
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 2.1e-83 312.8 220 72.7
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 7.9e-83 310.8 229 70.3
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 1.8e-82 309.7 224 69.6
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 3.9e-82 308.5 223 72.2
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 3.9e-82 308.5 236 70.3
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 6.7e-82 307.8 218 73.9
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 1.1e-81 307.0 216 70.8
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 1.5e-81 306.6 224 70.1
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.6e-80 303.1 239 68.2
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 2.1e-80 302.8 238 68.5
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 2.1e-80 302.8 243 65.4
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.1e-80 302.8 227 70.5
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 2.8e-80 302.4 229 68.6
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 1.4e-79 300.1 220 69.1
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.8e-79 299.7 245 63.7
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 9.0e-79 297.4 209 72.7
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 5.8e-78 294.7 217 70.5
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 1.0e-77 293.9 208 72.6
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 1.3e-77 293.5 215 70.7
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 2.2e-77 292.7 214 69.6
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 2.9e-77 292.4 221 69.2
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 5.0e-77 291.6 209 70.3
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 6.5e-77 291.2 220 68.6
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 1.9e-76 289.7 219 68.0
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 7.2e-76 287.7 220 66.8
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 4.6e-75 285.0 223 69.1
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 7.9e-75 284.3 214 67.3
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 1.0e-74 283.9 242 64.5
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.3e-74 283.5 218 70.2
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 3.9e-74 282.0 215 69.8
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 5.1e-74 281.6 209 69.4
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 1.1e-73 280.4 223 65.0
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 1.5e-73 280.0 237 64.6
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 1.9e-73 279.6 222 67.1
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 9.7e-73 277.3 225 64.4
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 1.3e-72 276.9 225 64.4
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 1.3e-72 276.9 221 66.1
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 2.8e-72 275.8 222 65.3
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 3.7e-72 275.4 223 65.5
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.7e-72 275.4 196 71.4
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 6.3e-72 274.6 219 65.8
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 6.3e-72 274.6 221 65.6
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 1.4e-71 273.5 203 68.5
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 1.8e-71 273.1 219 67.6
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 2.4e-71 272.7 238 60.9
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 3.1e-71 272.3 236 61.4
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 3.1e-71 272.3 221 65.2
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 4.1e-71 271.9 232 63.8
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 4.1e-71 271.9 229 63.8
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 4.1e-71 271.9 210 69.0
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 5.3e-71 271.6 234 61.5
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.2e-70 270.4 220 65.5
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.5e-70 270.0 216 64.4
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 2.6e-70 269.2 208 66.3
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 5.9e-70 268.1 178 77.0
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 5.9e-70 268.1 223 63.2
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 7.7e-70 267.7 206 67.5
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 7.7e-70 267.7 223 62.8
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 7.7e-70 267.7 223 62.8
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.3e-69 266.9 236 60.6
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 1.7e-69 266.5 224 63.4
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 2.9e-69 265.8 333 48.6
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 2.9e-69 265.8 219 63.5
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 5.0e-69 265.0 210 64.8
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 6.5e-69 264.6 236 60.6
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 1.1e-68 263.8 233 60.5
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.9e-68 263.1 217 64.1
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 3.2e-68 262.3 223 61.4
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 5.5e-68 261.5 235 61.3
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 5.5e-68 261.5 220 61.8
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 7.2e-68 261.2 237 59.5
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 1.2e-67 260.4 210 63.8
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 1.6e-67 260.0 209 65.6
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 1.6e-67 260.0 216 62.0
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 2.1e-67 259.6 216 63.0
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 2.7e-67 259.2 237 59.1
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 1.8e-66 256.5 214 64.5
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 1.8e-66 256.5 237 60.8
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 2.3e-66 256.1 225 61.8
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 6.7e-66 254.6 278 53.2
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 2.0e-65 253.1 218 59.6
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.5e-65 252.7 190 69.5
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 4.3e-65 251.9 166 77.7
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 5.7e-65 251.5 178 71.9
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 1.7e-64 250.0 226 59.7
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 1.7e-64 250.0 182 72.5
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 2.8e-64 249.2 229 59.8
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 1.4e-63 246.9 218 60.6
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 1.8e-63 246.5 211 61.1
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 3.4e-62 242.3 231 58.4
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 5.9e-62 241.5 164 73.8
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 6.5e-61 238.0 220 58.6
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.1e-60 237.3 162 71.6
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 1.4e-60 236.9 214 57.9
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 9.4e-60 234.2 136 87.5
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 1.6e-59 233.4 217 57.6
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 6.1e-59 231.5 176 67.6
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 7.9e-59 231.1 176 68.8
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 3.0e-58 229.2 217 56.7
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 4.4e-57 225.3 223 53.4
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.3e-56 223.8 202 59.4
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 1.7e-56 223.4 145 75.9
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.1e-55 220.7 253 50.2
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 1.0e-53 214.2 128 79.7
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 3.8e-53 212.2 217 52.5
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 1.9e-52 209.9 230 52.6
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 1.4e-50 203.8 359 39.3
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 2.0e-46 189.9 182 57.1
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 3.5e-46 189.1 182 57.1
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 3.5e-46 189.1 182 57.1
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 7.7e-46 188.0 210 51.0
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 5.0e-45 185.3 173 59.5
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 8.5e-45 184.5 178 58.4
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 1.1e-44 184.1 200 50.5
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 1.9e-44 183.3 175 54.3
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.2e-41 174.1 204 50.0
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 1.8e-39 166.8 149 59.1
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.7e-37 160.2 120 69.2
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 5.0e-29 132.1 107 67.3
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 2.5e-28 129.8 176 45.5
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.6e-22 110.5 85 69.4
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 7.8e-22 108.2 180 39.4
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 1.3e-21 107.5 88 68.2
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 2.1e-19 100.1 63 76.2
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 1.0e-18 97.8 81 58.0
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 2.9e-16 89.7 153 36.6
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 3.2e-15 86.3 165 33.3
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 5.4e-15 85.5 187 35.3
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.2e-14 84.3 169 37.9
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 2.7e-14 83.2 171 36.3
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 7.8e-14 81.6 57 64.9
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 8.6e-13 78.2 55 69.1
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 7.3e-12 75.1 94 50.0
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.8e-11 73.2 55 67.3
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 5.2e-10 68.9 44 72.7
DCAR_009276 Daucus carota HOM05D005011 ORTHO05D006443 4.6e-06 55.8 64 42.2
MCO08G161 Micromonas commoda HOM05D000175 ORTHO05D000481 4.6e-06 55.8 61 45.9
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.6e-06 55.8 85 43.5
MCO02G050 Micromonas commoda HOM05D000175 ORTHO05D000481 6.0e-06 55.5 62 40.3
Sp3g33770 Schrenkiella parvula HOM05D000175 ORTHO05D000481 6.0e-06 55.5 62 45.2
Nitab4.5_0005191g0060 Nicotiana tabacum HOM05D000175 ORTHO05D000481 7.8e-06 55.1 62 40.3


User provided reference genes

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