Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 3.2e-251 871.3 451 100.0
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 6.9e-145 518.1 363 77.1
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 5.6e-139 498.4 372 73.1
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 3.8e-135 485.7 365 72.9
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 1.1e-129 467.6 395 66.3
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.1e-129 466.1 359 70.8
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.0e-127 458.8 359 69.9
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 5.0e-127 458.8 359 69.9
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.8e-108 397.1 422 57.3
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.7e-98 362.8 346 62.4
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 2.4e-89 333.6 371 53.6
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 7.7e-88 328.6 348 57.8
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 1.7e-82 310.8 379 47.5
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 1.7e-82 310.8 357 52.7
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 1.6e-80 304.3 394 49.2
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 9.2e-73 278.5 362 48.6
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 7.8e-72 275.4 388 45.9
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.0e-71 275.0 363 49.0
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.3e-71 274.6 344 49.1
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 1.5e-70 271.2 370 47.8
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 7.3e-70 268.9 387 44.4
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 1.1e-68 265.0 352 49.4
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 7.5e-67 258.8 373 45.8
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 4.9e-66 256.1 361 46.8
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 8.3e-66 255.4 376 45.7
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 2.4e-65 253.8 390 43.3
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 9.2e-65 251.9 433 42.0
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 2.3e-63 247.3 384 42.4
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 3.9e-63 246.5 341 48.7
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 7.3e-62 242.3 352 45.5
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 7.3e-62 242.3 338 47.3
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 6.2e-61 239.2 382 44.8
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 1.1e-60 238.4 365 44.9
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.3e-60 237.3 273 51.6
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 2.3e-60 237.3 266 53.4
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 9.9e-59 231.9 369 45.5
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 1.2e-56 224.9 367 44.1
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 2.3e-55 220.7 378 43.4
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 5.6e-54 216.1 386 39.9
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 9.6e-54 215.3 365 39.5
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 2.1e-53 214.2 353 39.7
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 8.1e-53 212.2 367 43.1
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 8.1e-53 212.2 240 51.2
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 6.8e-52 209.1 373 38.3
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.2e-51 208.4 377 40.6
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 4.4e-51 206.5 242 47.1
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 3.8e-50 203.4 203 55.7
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 1.9e-49 201.1 254 46.9
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 2.7e-48 197.2 247 46.6
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 7.8e-48 195.7 278 43.9
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 2.3e-47 194.1 373 38.3
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 2.5e-46 190.7 382 37.7
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 2.5e-46 190.7 377 38.7
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 9.6e-46 188.7 370 37.0
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 3.6e-45 186.8 334 41.0
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 1.8e-44 184.5 354 37.9
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 6.9e-44 182.6 367 39.2
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 9.0e-44 182.2 364 36.5
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 3.4e-43 180.3 367 39.0
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 2.9e-42 177.2 379 38.3
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 1.6e-40 171.4 349 38.7
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 3.5e-40 170.2 362 37.6
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 2.3e-39 167.5 417 35.0
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 3.0e-39 167.2 399 34.1
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 3.3e-38 163.7 348 37.4
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 9.6e-38 162.2 353 37.7
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 8.1e-37 159.1 358 36.6
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 3.1e-36 157.1 382 34.3
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 4.0e-36 156.8 345 36.8
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.2e-35 155.2 361 34.9
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 1.5e-35 154.8 357 34.7
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 1.3e-34 151.8 343 33.8
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 4.9e-34 149.8 362 32.6
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 6.4e-34 149.4 363 36.6
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 8.4e-34 149.1 276 35.9
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 1.4e-33 148.3 382 35.6
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 3.2e-33 147.1 368 34.8
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 2.1e-32 144.4 365 34.8
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 1.0e-31 142.1 362 32.0
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 2.3e-31 141.0 383 32.4
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 1.3e-29 135.2 214 43.0
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 1.8e-28 131.3 361 33.0
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 2.4e-28 131.0 364 33.5
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 3.1e-28 130.6 229 39.3
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 5.8e-27 126.3 276 33.7
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 1.3e-26 125.2 340 29.7
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 9.3e-25 119.0 279 31.9
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 1.6e-24 118.2 235 36.2
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 7.9e-24 115.9 375 29.9
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 1.3e-23 115.2 375 30.7
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 1.3e-23 115.2 375 30.7
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 2.3e-23 114.4 375 31.2
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 3.9e-23 113.6 379 28.0
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 5.1e-23 113.2 375 30.9
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 6.7e-23 112.8 375 30.4
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 1.6e-21 108.2 212 38.7
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 2.1e-21 107.8 385 29.1
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 2.4e-20 104.4 346 30.9
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 5.3e-20 103.2 238 35.7
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 9.0e-20 102.4 212 37.7
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 2.0e-19 101.3 344 30.5
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 2.6e-19 100.9 360 28.6
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 5.0e-18 96.7 347 30.0
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 1.6e-16 91.7 228 33.8
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 6.7e-15 86.3 340 27.6
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 4.3e-14 83.6 390 28.5
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 1.6e-13 81.6 269 30.1
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 2.8e-13 80.9 202 34.2
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 6.3e-13 79.7 170 34.1
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 6.3e-13 79.7 195 30.8
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.1e-12 79.0 232 28.4
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 2.4e-12 77.8 195 30.3
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 3.1e-12 77.4 222 33.8
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 4.1e-12 77.0 243 28.0
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 5.3e-12 76.6 225 30.2
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 5.3e-12 76.6 191 31.9
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 6.9e-12 76.3 238 29.0
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 9.0e-12 75.9 224 28.1
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 1.2e-11 75.5 218 28.9
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 1.5e-11 75.1 226 28.8
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.5e-11 75.1 220 29.1
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.5e-11 75.1 220 28.6
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 3.4e-11 73.9 233 29.6
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 3.4e-11 73.9 233 28.3
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 5.9e-11 73.2 225 27.1
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 7.7e-11 72.8 228 28.5
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 1.3e-10 72.0 312 24.7
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.3e-10 72.0 223 26.9
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 2.2e-10 71.2 248 30.6
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.2e-10 71.2 291 23.4
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 2.9e-10 70.9 347 25.6
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 6.5e-10 69.7 210 28.1
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 6.5e-10 69.7 201 29.4
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 8.5e-10 69.3 221 29.4
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 8.5e-10 69.3 289 23.5
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 1.1e-09 68.9 214 30.8
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 1.1e-09 68.9 356 25.8
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 1.4e-09 68.6 295 26.1
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.5e-09 67.8 211 32.7
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 3.2e-09 67.4 226 27.9
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 3.2e-09 67.4 110 37.3
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 4.2e-09 67.0 123 32.5
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 4.2e-09 67.0 226 27.9
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 4.2e-09 67.0 222 29.3
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 5.5e-09 66.6 178 33.7
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 7.2e-09 66.2 210 28.6
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 9.4e-09 65.9 69 44.9
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 1.2e-08 65.5 211 26.5
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 1.6e-08 65.1 220 25.9
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 2.1e-08 64.7 86 40.7
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.7e-08 64.3 226 27.4
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 2.7e-08 64.3 252 26.6
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.6e-08 63.9 233 29.2
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.6e-08 63.9 233 29.2
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 3.6e-08 63.9 256 27.3
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 7.9e-08 62.8 205 27.8
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 7.9e-08 62.8 115 34.8
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 7.9e-08 62.8 136 33.8
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.8e-07 61.6 215 28.8
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 2.3e-07 61.2 347 26.2
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.3e-07 61.2 209 29.7
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 3.0e-07 60.8 248 26.6
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 3.0e-07 60.8 260 25.8
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 3.9e-07 60.5 227 28.2
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 5.1e-07 60.1 212 30.7
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 5.1e-07 60.1 206 25.7
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 5.1e-07 60.1 215 30.7
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 6.7e-07 59.7 209 28.2
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 6.7e-07 59.7 216 27.8
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 6.7e-07 59.7 256 27.3
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 6.7e-07 59.7 268 29.1
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 8.8e-07 59.3 241 27.0
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 1.5e-06 58.5 222 27.0
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 2.0e-06 58.2 204 28.4
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.0e-06 58.2 271 29.9
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 2.0e-06 58.2 227 26.9
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 2.0e-06 58.2 93 34.4
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 2.5e-06 57.8 260 27.3
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 3.3e-06 57.4 261 25.3
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 4.3e-06 57.0 93 34.4
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 5.7e-06 56.6 85 37.6
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 9.7e-06 55.8 209 27.8


User provided reference genes

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