Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib041G0324 Durio zibethinus HOM05D000205 ORTHO05D019098 3.1e-75 285.0 142 100.0
Duzib138G0755 Durio zibethinus HOM05D000205 ORTHO05D001133 4.5e-50 201.4 122 83.6
Thecc.04G131500 Theobroma cacao HOM05D000205 ORTHO05D001133 4.5e-50 201.4 122 83.6
COL.COLO4_09351 Corchorus olitorius HOM05D000205 ORTHO05D001133 8.5e-49 197.2 122 81.1
Gohir.A07G072200 Gossypium hirsutum HOM05D000205 ORTHO05D001133 3.3e-45 185.3 122 76.2
Gorai.001G081100 Gossypium raimondii HOM05D000205 ORTHO05D001133 5.9e-42 174.5 122 72.1
Gohir.D07G076400 Gossypium hirsutum HOM05D000205 ORTHO05D001133 1.0e-41 173.7 122 73.0
Gohir.D11G170300 Gossypium hirsutum HOM05D000205 ORTHO05D001133 1.9e-40 169.5 122 71.3
Gorai.007G182200 Gossypium raimondii HOM05D000205 ORTHO05D001133 1.9e-40 169.5 122 71.3
Gohir.A11G164000 Gossypium hirsutum HOM05D000205 ORTHO05D001133 7.4e-37 157.5 122 68.0
Duzib187G1301 Durio zibethinus HOM05D005928 ORTHO05D019098 9.4e-32 140.6 84 85.7
Cpa.g.sc170.55 Carica papaya HOM05D000205 ORTHO05D001133 2.2e-28 129.4 125 58.4
Dinv34812 Davidia involucrata HOM05D004610 ORTHO05D001133 4.8e-28 128.3 122 55.7
THA.LOC104820942 Tarenaya hassleriana HOM05D000205 ORTHO05D001133 1.1e-27 127.1 126 59.5
Hma1.2p1_1109F.1_g258140 Hydrangea macrophylla HOM05D000205 ORTHO05D001133 7.0e-27 124.4 123 55.3
GSVIVG01031006001 Vitis vinifera HOM05D000205 ORTHO05D001133 8.5e-25 117.5 122 54.1
TAR622G1003 Trochodendron aralioides HOM05D000205 ORTHO05D001133 9.4e-24 114.0 122 50.8
Actinidia15891 Actinidia chinensis HOM05D000205 ORTHO05D001133 1.2e-23 113.6 125 51.2
CSS0011459 Camellia sinensis var. sinensis HOM05D000205 ORTHO05D001133 4.7e-23 111.7 123 52.0
CSS0046648 Camellia sinensis var. sinensis HOM05D000205 ORTHO05D001133 4.7e-23 111.7 123 52.0
Prupe.3G144600 Prunus persica HOM05D000205 ORTHO05D001133 4.7e-23 111.7 124 49.2
Nitab4.5_0007990g0060 Nicotiana tabacum HOM05D000205 ORTHO05D019098 1.8e-22 109.8 122 48.4
Atru.chr1.1655 Acer truncatum HOM05D000205 ORTHO05D001133 2.3e-22 109.4 124 52.4
Nn4g23908 Nelumbo nucifera HOM05D000205 ORTHO05D001133 2.3e-22 109.4 122 50.8
Nitab4.5_0000912g0110 Nicotiana tabacum HOM05D000205 ORTHO05D001133 5.2e-22 108.2 122 48.4
Rhsim10G0069000 Rhododendron simsii HOM05D000205 ORTHO05D001133 5.2e-22 108.2 125 53.6
Aqoxy3G03960 Aquilegia oxysepala HOM05D000205 ORTHO05D001133 2.6e-21 105.9 122 49.2
Thhalv10013176m.g Eutrema salsugineum HOM05D000205 ORTHO05D001133 3.4e-21 105.5 125 50.4
QL12p016484 Quercus lobata HOM05D000205 ORTHO05D001133 3.4e-21 105.5 123 49.6
Sc11g0008390 Simmondsia chinensis HOM05D000205 ORTHO05D001133 4.4e-21 105.1 128 52.3
PGR004G2880 Punica granatum HOM05D000205 ORTHO05D001133 7.5e-21 104.4 119 52.1
PGSC0003DMG400026402 Solanum tuberosum HOM05D000205 ORTHO05D001133 1.3e-20 103.6 122 46.7
CiPaw.04G043300 Carya illinoinensis HOM05D000205 ORTHO05D001133 2.8e-20 102.4 123 50.4
Cfa007912 Carpinus fangiana HOM05D000205 ORTHO05D001133 1.1e-19 100.5 123 50.4
MD09G1254500 Malus domestica HOM05D000205 ORTHO05D001133 1.1e-19 100.5 126 45.2
Hund13708 Selenicereus undatus HOM05D000205 ORTHO05D001133 1.1e-19 100.5 129 48.1
Ah.10g037720 Amaranthus hybridus HOM05D000205 ORTHO05D001133 1.4e-19 100.1 129 49.6
Sp6g27990 Schrenkiella parvula HOM05D000205 ORTHO05D001133 1.4e-19 100.1 125 50.4
Solyc02g086160.4 Solanum lycopersicum HOM05D000205 ORTHO05D001133 3.1e-19 99.0 122 45.9
AL6G27030 Arabidopsis lyrata HOM05D000205 ORTHO05D001133 4.1e-19 98.6 124 49.2
Ciclev10011430m.g Citrus clementina HOM05D000205 ORTHO05D001133 4.1e-19 98.6 125 48.8
Sopen02g030850 Solanum pennellii HOM05D000205 ORTHO05D001133 4.1e-19 98.6 122 45.9
AUR62023288 Chenopodium quinoa HOM05D000205 ORTHO05D001133 1.6e-18 96.7 130 49.2
Lj4A190G76 Lonicera japonica HOM05D000205 ORTHO05D001133 1.6e-18 96.7 123 47.2
Lalb_Chr02g0158171 Lupinus albus HOM05D000205 ORTHO05D001133 2.7e-18 95.9 123 48.0
TWI53G0812 Tripterygium wilfordii HOM05D000205 ORTHO05D001133 3.5e-18 95.5 124 46.8
EL10Ac2g04553 Beta vulgaris HOM05D000205 ORTHO05D001133 7.7e-18 94.4 130 49.2
BcaC04g18893 Brassica carinata HOM05D000205 ORTHO05D001133 7.7e-18 94.4 126 48.4
BcaNung07011 Brassica carinata HOM05D000205 ORTHO05D001133 7.7e-18 94.4 126 48.4
TWI77G0813 Tripterygium wilfordii HOM05D000205 ORTHO05D001133 7.7e-18 94.4 124 46.0
A10p22900 Brassica napus HOM05D000205 ORTHO05D001133 1.3e-17 93.6 126 50.0
BraA10t44357Z Brassica rapa HOM05D000205 ORTHO05D001133 1.3e-17 93.6 126 50.0
Carub.0006s1434 Capsella rubella HOM05D000205 ORTHO05D001133 1.3e-17 93.6 128 50.0
AUR62009013 Chenopodium quinoa HOM05D000205 ORTHO05D001133 1.3e-17 93.6 131 48.1
AUR62043934 Chenopodium quinoa HOM05D000205 ORTHO05D001133 1.3e-17 93.6 131 48.1
CANSAT78G1179 Cannabis sativa HOM05D000205 ORTHO05D001133 1.7e-17 93.2 129 48.1
CARHR197150 Cardamine hirsuta HOM05D000205 ORTHO05D001133 1.7e-17 93.2 124 47.6
Lj2g0024864 Lotus japonicus HOM05D000205 ORTHO05D001133 2.3e-17 92.8 122 45.9
AT5G16150 Arabidopsis thaliana HOM05D000205 ORTHO05D001133 3.8e-17 92.0 125 48.8
Glyma.13G045000 Glycine max HOM05D000205 ORTHO05D001133 5.0e-17 91.7 123 45.5
Lalb_Chr21g0317771 Lupinus albus HOM05D000205 ORTHO05D001133 5.0e-17 91.7 123 45.5
Peaxi162Scf00394g00813 Petunia axillaris HOM05D000205 ORTHO05D001133 5.0e-17 91.7 127 46.5
vmacro05538 Vaccinium macrocarpon HOM05D000205 ORTHO05D001133 5.0e-17 91.7 133 45.9
Aa31LG11G13460 Aethionema arabicum HOM05D000205 ORTHO05D001133 6.5e-17 91.3 130 46.2
Rhsim08G0082800 Rhododendron simsii HOM05D000205 ORTHO05D001133 6.5e-17 91.3 126 47.6
C03p08810 Brassica napus HOM05D000205 ORTHO05D001133 8.6e-17 90.9 132 47.7
BolC3t13377H Brassica oleracea HOM05D000205 ORTHO05D001133 8.6e-17 90.9 132 47.7
Lj2C441T12 Lonicera japonica HOM05D000205 ORTHO05D001133 1.1e-16 90.5 123 48.0
MSTRG.23580 Avicennia marina HOM05D000205 ORTHO05D001133 1.5e-16 90.1 123 42.3
BraA03t10086Z Brassica rapa HOM05D000205 ORTHO05D001133 1.5e-16 90.1 135 43.7
MBI16_g13191_MAGBIO Magnolia biondii HOM05D000205 ORTHO05D001133 1.5e-16 90.1 125 45.6
Oeu030790.2 Olea europaea HOM05D000205 ORTHO05D001133 1.9e-16 89.7 123 44.7
CiPaw.03G063000 Carya illinoinensis HOM05D000205 ORTHO05D001133 2.5e-16 89.4 123 48.0
A03p07580 Brassica napus HOM05D000205 ORTHO05D001133 4.2e-16 88.6 139 42.4
vmacro18071 Vaccinium macrocarpon HOM05D000205 ORTHO05D001133 5.5e-16 88.2 174 34.5
BcaB01g05001 Brassica carinata HOM05D000205 ORTHO05D001133 7.2e-16 87.8 125 45.6
Nn3g17905 Nelumbo nucifera HOM05D000205 ORTHO05D001133 7.2e-16 87.8 110 50.0
Migut.H00224 Erythranthe guttata HOM05D000205 ORTHO05D001133 9.5e-16 87.4 121 42.1
Medtr6g018790 Medicago truncatula HOM05D000205 ORTHO05D001133 1.2e-15 87.0 122 44.3
Eucgr.F02507 Eucalyptus grandis HOM05D000205 ORTHO05D001133 1.6e-15 86.7 80 57.5
Glyma.19G050202 Glycine max HOM05D000205 ORTHO05D019098 1.6e-15 86.7 123 44.7
Actinidia36330 Actinidia chinensis HOM05D000205 ORTHO05D001133 2.8e-15 85.9 70 62.9
arahy.Tifrunner.gnm1.ann1.L58W2K Arachis hypogaea HOM05D000205 ORTHO05D001133 2.8e-15 85.9 123 41.5
arahy.Tifrunner.gnm1.ann1.K2G1DY Arachis hypogaea HOM05D000205 ORTHO05D001133 4.7e-15 85.1 123 41.5
MELO3C023747.2 Cucumis melo HOM05D000205 ORTHO05D001133 4.7e-15 85.1 124 46.0
CsaV3_3G020210 Cucumis sativus L. HOM05D000205 ORTHO05D001133 1.4e-14 83.6 124 45.2
Psat1g080960 Pisum sativum HOM05D000205 ORTHO05D001133 1.4e-14 83.6 122 42.6
PSO782G4399 Papaver somniferum HOM05D000205 ORTHO05D001133 1.8e-14 83.2 132 42.4
CDE06G0151 Ceratophyllum demersum HOM05D000205 ORTHO05D001133 4.0e-14 82.0 126 43.7
PSO063G1834 Papaver somniferum HOM05D000205 ORTHO05D001133 5.2e-14 81.6 132 41.7
CDE12G0776 Ceratophyllum demersum HOM05D000205 ORTHO05D001133 1.2e-13 80.5 126 42.1
BolC9t58927H Brassica oleracea HOM05D000205 ORTHO05D001133 1.5e-13 80.1 127 44.1
C09p60850 Brassica napus HOM05D000205 ORTHO05D001133 2.0e-13 79.7 127 44.1
Hma1.2p1_0075F.1_g039310 Hydrangea macrophylla HOM05D000205 ORTHO05D001133 2.0e-13 79.7 78 57.7
MD17G1246900 Malus domestica HOM05D000205 ORTHO05D001133 2.6e-13 79.3 66 62.1
BcaC04g18894 Brassica carinata HOM05D000205 ORTHO05D001133 4.4e-13 78.6 133 42.1
Cc07_g08710 Coffea canephora HOM05D000205 ORTHO05D001133 7.5e-13 77.8 92 56.5
FAN23G1586 Fragaria x ananassa HOM05D000205 ORTHO05D001133 1.7e-12 76.6 129 44.2
SGA_v2.0_scaffold202G41428 Striga asiatica HOM05D000205 ORTHO05D001133 1.7e-12 76.6 123 39.8
Manes.01G111700 Manihot esculenta HOM05D000205 ORTHO05D001133 2.8e-12 75.9 129 39.5
SalBow3G4312 Salvia bowleyana HOM05D000205 ORTHO05D001133 4.9e-12 75.1 122 39.3
Ca_04371_v3 Cicer arietinum L. HOM05D000205 ORTHO05D001133 6.3e-12 74.7 128 41.4
Ca_08082_v3 Cicer arietinum L. HOM05D000205 ORTHO05D001133 8.3e-12 74.3 78 52.6
DCAR_025908 Daucus carota HOM05D000205 ORTHO05D001133 8.3e-12 74.3 126 41.3
RcHm_v2.0_Chr3g0485241 Rosa chinensis HOM05D000205 ORTHO05D001133 1.4e-11 73.6 127 41.7
DCAR_017185 Daucus carota HOM05D000205 ORTHO05D001133 2.4e-11 72.8 123 40.7
Lsat_1_v5_gn_3_80460 Lactuca sativa HOM05D000205 ORTHO05D001133 3.1e-11 72.4 78 53.8
FAN26G0831 Fragaria x ananassa HOM05D000205 ORTHO05D001133 4.1e-11 72.0 86 51.2
FvH4_1g25970 Fragaria vesca HOM05D000205 ORTHO05D001133 5.4e-11 71.6 86 51.2
FAN19G1856 Fragaria x ananassa HOM05D000205 ORTHO05D001133 5.4e-11 71.6 86 51.2
FAN28G1376 Fragaria x ananassa HOM05D000205 ORTHO05D001133 5.4e-11 71.6 86 51.2
Sed0025469 Sechium edule HOM05D000205 ORTHO05D001133 5.4e-11 71.6 110 46.4
VMungo0464G1577 Vigna mungo HOM05D000205 ORTHO05D001133 5.4e-11 71.6 124 40.3
arahy.Tifrunner.gnm1.ann1.1TM57H Arachis hypogaea HOM05D000205 ORTHO05D001133 9.2e-11 70.9 83 55.4
arahy.Tifrunner.gnm1.ann1.PZ9B5S Arachis hypogaea HOM05D000205 ORTHO05D001133 9.2e-11 70.9 83 55.4
ATR1125G022 Amborella trichopoda HOM05D000205 ORTHO05D001133 1.2e-10 70.5 99 42.4
Hund16162 Selenicereus undatus HOM05D000205 ORTHO05D001133 1.6e-10 70.1 162 34.0
Lsat_1_v5_gn_2_79320 Lactuca sativa HOM05D000205 ORTHO05D001133 2.0e-10 69.7 81 55.6
Phvul.004G061900 Phaseolus vulgaris HOM05D000205 ORTHO05D001133 2.7e-10 69.3 123 38.2
Glyma.08G367100 Glycine max HOM05D000205 ORTHO05D001133 5.9e-10 68.2 89 46.1
Glyma.18G295300 Glycine max HOM05D000205 ORTHO05D001133 5.9e-10 68.2 91 45.1
HPP92_004795 Vanilla planifolia HOM05D000205 ORTHO05D001133 1.3e-09 67.0 76 53.9
VMungo1383G1468 Vigna mungo HOM05D000205 ORTHO05D001133 1.3e-09 67.0 84 42.9
Lsat_1_v5_gn_4_47580 Lactuca sativa HOM05D000205 ORTHO05D019098 2.3e-09 66.2 56 64.3
Manes.02G069900 Manihot esculenta HOM05D000205 ORTHO05D001133 2.3e-09 66.2 139 39.6
Phvul.008G007500 Phaseolus vulgaris HOM05D000205 ORTHO05D001133 3.8e-09 65.5 84 45.2
TPR.G32466 Trifolium pratense HOM05D000205 ORTHO05D001133 6.6e-09 64.7 49 65.3
Zm00001eb335350 Zea mays HOM05D000205 ORTHO05D001133 1.9e-08 63.2 77 50.6
ECA238G1739 Erigeron canadensis HOM05D000205 ORTHO05D001133 2.5e-08 62.8 60 65.0
Medtr7g082270 Medicago truncatula HOM05D000205 ORTHO05D001133 4.3e-08 62.0 81 46.9
Psat3g097440 Pisum sativum HOM05D000205 ORTHO05D001133 9.5e-08 60.8 80 46.2
DCAR_008460 Daucus carota HOM05D000205 ORTHO05D001133 1.2e-07 60.5 59 55.9
TPR.G16553 Trifolium pratense HOM05D000205 ORTHO05D001133 8.0e-07 57.8 79 44.3
Migut.L00332 Erythranthe guttata HOM05D000205 ORTHO05D001133 1.0e-06 57.4 66 50.0
Os01g0133400 Oryza sativa ssp. japonica HOM05D000205 ORTHO05D001133 1.0e-06 57.4 84 45.2
unitig_699.g19709 Utricularia gibba HOM05D000205 ORTHO05D001133 3.0e-06 55.8 124 35.5
Pp3c25_14870 Physcomitrium patens HOM05D000205 ORTHO05D001133 6.8e-06 54.7 120 33.3


User provided reference genes

Program Settings