Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.8e-245 852.0 411 100.0
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 2.8e-201 705.3 391 88.2
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 4.1e-197 691.4 391 85.4
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.6e-195 683.7 391 85.7
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.3e-194 681.8 391 85.4
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.0e-192 674.9 391 84.7
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 5.4e-189 664.5 392 83.2
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 2.5e-178 629.0 386 77.5
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 7.1e-173 610.9 376 76.9
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 5.1e-171 604.7 377 76.4
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 1.3e-169 600.1 378 75.7
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 3.7e-169 598.6 370 76.5
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.8e-168 596.3 375 74.7
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.0e-167 592.8 376 76.9
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 5.8e-167 591.3 359 78.0
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 7.6e-167 590.9 381 74.5
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 7.6e-167 590.9 383 74.2
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.0e-166 590.5 383 73.9
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.0e-166 590.5 384 73.7
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.0e-166 590.5 392 73.7
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.3e-166 590.1 400 71.5
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 1.3e-166 590.1 363 76.0
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 2.9e-166 589.0 366 75.1
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 3.8e-166 588.6 372 75.3
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 4.9e-166 588.2 377 74.8
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.9e-166 588.2 377 74.8
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 4.9e-166 588.2 344 79.7
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 6.5e-166 587.8 389 73.8
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 6.5e-166 587.8 380 73.7
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 6.5e-166 587.8 380 73.7
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.1e-165 587.0 371 75.7
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.1e-165 587.0 369 75.1
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.1e-165 587.0 363 75.5
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.4e-165 586.6 386 72.5
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 5.5e-165 584.7 365 75.3
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 9.3e-165 583.9 388 72.9
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 2.1e-164 582.8 381 74.5
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 3.5e-164 582.0 390 72.6
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 6.0e-164 581.3 353 76.8
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.0e-163 580.5 387 72.1
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 1.3e-163 580.1 388 73.2
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.8e-163 579.7 388 72.9
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 3.9e-163 578.6 389 73.0
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 3.9e-163 578.6 383 73.4
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 3.9e-163 578.6 363 74.7
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 8.7e-163 577.4 388 72.7
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 1.1e-162 577.0 367 74.4
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 2.5e-162 575.9 386 72.0
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 2.5e-162 575.9 386 72.0
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 3.3e-162 575.5 364 74.2
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 4.3e-162 575.1 387 71.8
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 7.4e-162 574.3 386 71.8
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 9.6e-162 573.9 345 78.3
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.6e-162 573.9 337 79.2
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.3e-161 573.5 374 73.5
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 2.1e-161 572.8 386 72.0
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 3.7e-161 572.0 390 73.1
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 2.4e-160 569.3 361 75.9
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 3.1e-160 568.9 401 68.8
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 4.0e-160 568.5 365 74.0
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 9.0e-160 567.4 352 76.7
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 2.0e-159 566.2 374 70.9
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 2.6e-159 565.8 380 71.1
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 2.9e-158 562.4 344 75.0
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 8.4e-158 560.8 376 71.3
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.4e-157 560.1 343 75.2
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 2.5e-157 559.3 380 71.6
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 3.2e-157 558.9 412 70.1
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 4.2e-157 558.5 389 69.7
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 7.1e-157 557.8 370 71.4
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 7.9e-156 554.3 344 76.2
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 7.9e-156 554.3 404 66.1
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 7.9e-156 554.3 381 69.0
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.8e-155 553.1 383 69.2
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 3.9e-155 552.0 383 69.2
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 4.3e-154 548.5 379 68.3
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 4.3e-154 548.5 382 70.2
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.3e-153 547.0 381 68.0
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.6e-153 546.6 361 73.4
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.6e-153 546.6 361 73.4
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.6e-153 546.6 364 70.9
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 2.2e-153 546.2 368 69.6
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 2.2e-153 546.2 364 70.6
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 4.1e-152 542.0 344 73.3
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 6.9e-152 541.2 339 75.2
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 6.9e-152 541.2 397 67.5
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 2.0e-151 539.7 378 68.8
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.4e-151 538.9 338 74.9
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.2e-150 536.2 351 72.1
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.1e-149 533.9 353 71.4
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.5e-149 532.7 351 72.1
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.5e-149 532.7 396 66.7
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 9.4e-149 530.8 361 67.3
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 2.1e-148 529.6 383 66.8
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 2.7e-148 529.3 378 67.7
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 3.6e-148 528.9 371 68.7
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 4.6e-148 528.5 322 74.5
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 7.9e-148 527.7 345 71.3
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 6.7e-147 524.6 370 68.4
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 8.8e-147 524.2 316 75.9
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 5.7e-146 521.5 334 73.7
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 5.7e-146 521.5 380 65.3
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 5.7e-146 521.5 392 64.5
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.7e-145 520.0 309 77.7
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 3.7e-145 518.8 378 64.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 6.3e-145 518.1 345 70.1
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.7e-142 510.0 362 66.3
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 5.0e-142 508.4 361 65.7
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 8.5e-142 507.7 348 70.4
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 7.2e-141 504.6 346 69.9
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 6.7e-139 498.0 372 63.2
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.0e-138 496.5 341 71.8
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.8e-137 492.7 389 64.0
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.6e-135 486.1 368 62.5
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 7.2e-133 478.0 365 63.6
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.1e-132 476.5 385 61.3
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 4.0e-131 472.2 386 59.3
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 5.2e-131 471.9 364 64.0
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 4.4e-130 468.8 378 61.9
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 3.7e-129 465.7 398 59.0
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.0e-126 457.6 236 89.0
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.8e-123 446.8 348 60.9
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.3e-123 446.4 330 64.8
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.0e-123 445.7 304 72.0
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.0e-122 443.4 301 68.8
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.6e-122 443.0 284 73.2
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.7e-121 439.1 344 62.2
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 2.0e-114 416.8 380 57.1
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 4.4e-114 415.6 327 58.7
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 2.5e-109 399.8 354 55.1
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 3.0e-107 392.9 314 62.1
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.2e-105 386.7 198 88.9
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.5e-103 379.4 206 83.5
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 7.0e-96 355.1 198 80.8
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.1e-91 341.3 219 75.3
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.1e-88 331.3 177 87.0
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 6.6e-86 322.0 235 67.7
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 9.5e-85 318.2 253 62.5
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 6.8e-83 312.0 283 53.0
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.9e-81 305.8 229 65.5
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 3.9e-78 296.2 397 39.5
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 3.1e-75 286.6 221 63.3
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.6e-71 272.7 233 57.1
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 6.6e-70 268.9 303 43.9
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 6.6e-70 268.9 341 41.1
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 6.9e-59 232.3 200 56.5
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 9.0e-59 231.9 378 35.7
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 4.6e-55 219.5 336 37.8
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.2e-48 196.8 141 70.2
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.5e-37 161.4 148 58.1
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.2e-32 143.3 156 48.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 5.5e-32 142.9 118 60.2
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.9e-26 122.9 65 84.6
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.4e-22 111.7 57 86.0
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 4.0e-06 57.0 29 79.3


User provided reference genes

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