Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 2.2e-105 385.6 189 100.0
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 4.8e-84 314.7 184 84.2
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 3.1e-83 312.0 186 82.3
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 7.0e-83 310.8 184 84.8
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 5.9e-82 307.8 184 83.7
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.8e-78 296.2 186 80.6
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.0e-78 295.4 186 80.6
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 5.2e-78 294.7 186 80.1
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.3e-73 280.0 185 78.4
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.9e-73 278.9 185 78.4
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 2.9e-73 278.9 185 77.8
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 2.3e-70 269.2 184 75.0
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 3.4e-69 265.4 184 71.7
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 5.8e-69 264.6 184 72.8
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 7.5e-69 264.2 184 72.3
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 1.1e-67 260.4 184 71.2
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 1.6e-66 256.5 185 71.9
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 1.6e-66 256.5 184 69.6
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 2.7e-66 255.8 184 70.7
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 6.0e-66 254.6 184 71.7
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.0e-65 253.8 188 70.7
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 1.3e-65 253.4 184 71.7
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 6.6e-65 251.1 184 67.9
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 2.5e-64 249.2 184 68.5
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 4.3e-64 248.4 184 67.9
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 5.6e-64 248.1 186 68.8
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 1.6e-63 246.5 184 67.4
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.1e-63 246.1 185 70.3
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.1e-63 246.1 184 69.0
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 4.7e-63 245.0 185 69.2
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 2.0e-61 239.6 185 68.6
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 2.0e-61 239.6 185 68.6
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 2.6e-61 239.2 185 67.6
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 3.4e-61 238.8 186 69.4
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 3.4e-61 238.8 184 69.6
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 2.2e-60 236.1 186 66.1
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 4.9e-60 235.0 188 67.0
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 6.4e-60 234.6 185 69.2
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.4e-59 233.4 184 64.7
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.9e-59 233.0 185 68.6
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 1.9e-59 233.0 185 65.9
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 2.4e-59 232.6 184 65.2
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.4e-59 232.6 184 65.2
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 2.4e-59 232.6 186 64.5
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 3.2e-59 232.3 185 65.9
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 5.4e-59 231.5 184 65.2
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 5.4e-59 231.5 186 65.1
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 5.4e-59 231.5 185 65.9
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.5e-58 228.8 183 64.5
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 1.0e-57 227.3 184 64.7
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 2.3e-57 226.1 185 67.0
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 3.0e-57 225.7 185 67.0
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 8.6e-57 224.2 185 65.4
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 1.1e-56 223.8 181 66.3
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.5e-56 223.4 185 63.2
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 2.5e-56 222.6 190 65.3
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 5.6e-56 221.5 188 63.8
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 9.5e-56 220.7 186 62.9
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 1.2e-55 220.3 187 64.2
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.8e-55 219.2 185 66.5
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.6e-55 218.8 183 63.4
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 4.7e-55 218.4 185 63.8
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.1e-54 217.2 188 61.2
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.1e-54 217.2 182 63.2
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 1.8e-54 216.5 189 63.5
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 6.8e-54 214.5 186 61.3
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 1.2e-53 213.8 187 59.4
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 2.6e-53 212.6 183 62.3
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 3.4e-53 212.2 185 62.2
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 3.4e-53 212.2 184 60.9
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 3.4e-53 212.2 184 61.4
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 4.4e-53 211.8 186 60.2
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 4.4e-53 211.8 183 62.8
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 5.8e-53 211.5 188 59.6
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 1.7e-52 209.9 183 62.3
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 4.9e-52 208.4 186 59.7
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 6.4e-52 208.0 187 59.4
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 2.4e-51 206.1 186 60.8
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 3.2e-51 205.7 186 60.8
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 4.1e-51 205.3 186 60.8
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 1.2e-50 203.8 192 60.9
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.6e-50 203.4 185 58.4
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 3.5e-50 202.2 183 57.9
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 3.5e-50 202.2 198 58.1
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 6.0e-50 201.4 185 58.4
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 1.0e-49 200.7 184 59.2
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.0e-49 200.7 185 60.0
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 1.3e-49 200.3 193 56.5
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 1.3e-49 200.3 185 59.5
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 6.6e-49 198.0 185 58.4
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 8.6e-49 197.6 190 60.0
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 2.1e-47 193.0 191 55.0
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 2.8e-47 192.6 187 60.4
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 3.6e-47 192.2 185 55.1
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 8.1e-47 191.0 149 63.8
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 1.4e-46 190.3 184 58.2
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 2.4e-46 189.5 183 58.5
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 4.0e-46 188.7 200 55.0
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 5.2e-46 188.3 196 54.6
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 6.8e-46 188.0 193 54.9
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 8.9e-46 187.6 185 54.6
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.0e-45 186.4 185 55.1
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.3e-44 183.7 185 55.1
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 1.3e-44 183.7 191 55.0
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 1.7e-44 183.3 185 55.7
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 2.9e-44 182.6 183 56.3
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 3.8e-44 182.2 183 57.4
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.4e-43 180.3 184 57.1
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 1.9e-43 179.9 194 52.1
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.9e-43 179.9 200 53.5
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 1.2e-42 177.2 195 55.4
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 1.0e-41 174.1 191 53.9
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 1.7e-41 173.3 206 55.8
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 3.0e-41 172.6 194 55.2
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 6.6e-41 171.4 184 53.8
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 8.7e-41 171.0 184 51.1
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 2.5e-40 169.5 203 51.2
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 2.5e-40 169.5 184 54.9
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 2.5e-40 169.5 184 52.2
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 5.6e-40 168.3 146 61.0
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 6.9e-38 161.4 187 56.1
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 1.5e-37 160.2 185 51.4
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 2.0e-37 159.8 186 51.1
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 3.4e-37 159.1 188 51.1
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 7.6e-37 157.9 188 51.1
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 7.6e-37 157.9 191 51.8
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 2.9e-36 156.0 187 48.1
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 8.4e-36 154.5 184 51.6
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 8.4e-36 154.5 199 46.2
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 1.1e-35 154.1 186 51.6
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 1.1e-35 154.1 187 52.9
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.1e-35 154.1 189 48.1
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 7.1e-35 151.4 187 47.6
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 7.1e-35 151.4 185 49.7
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 9.3e-35 151.0 186 50.0
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 9.3e-35 151.0 189 50.3
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 1.6e-34 150.2 184 53.3
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 4.6e-34 148.7 184 50.0
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 4.6e-34 148.7 188 51.1
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 6.0e-34 148.3 186 48.4
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 6.0e-34 148.3 186 47.8
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 6.0e-34 148.3 186 48.4
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 6.0e-34 148.3 186 48.4
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 6.0e-34 148.3 192 47.4
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 2.3e-33 146.4 187 47.6
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 3.9e-33 145.6 188 46.8
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 3.9e-33 145.6 185 45.9
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 8.7e-33 144.4 220 43.2
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.6e-31 140.2 184 46.2
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 2.1e-31 139.8 189 48.1
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 2.1e-31 139.8 197 43.1
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.8e-31 139.4 185 47.0
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 6.2e-31 138.3 193 44.0
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 6.9e-30 134.8 201 47.8
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 1.7e-28 130.2 188 43.6
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 2.2e-28 129.8 169 49.1
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 8.4e-28 127.9 149 51.7
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 1.2e-26 124.0 211 44.1
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 1.6e-26 123.6 198 43.9
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 1.8e-25 120.2 203 40.4
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 3.9e-25 119.0 100 62.0
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 1.4e-22 110.5 190 44.7
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 1.5e-21 107.1 191 41.9
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 3.4e-21 105.9 193 39.4
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 2.2e-20 103.2 190 42.1
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 1.9e-19 100.1 152 42.1
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 7.1e-19 98.2 151 46.4
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 4.6e-18 95.5 168 42.3
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 2.3e-17 93.2 147 45.6
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 3.9e-17 92.4 153 44.4
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 8.7e-17 91.3 151 40.4
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 5.6e-16 88.6 90 55.6
Aqoxy5G02026 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 2.2e-12 76.6 154 39.0
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 4.6e-10 68.9 120 40.8
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 8.2e-07 58.2 125 33.6
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 2.4e-06 56.6 125 33.6
MBI01_g34161_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 3.1e-06 56.2 128 32.8
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 6.9e-06 55.1 122 32.0
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 6.9e-06 55.1 129 32.6
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 9.0e-06 54.7 128 32.8


User provided reference genes

Program Settings