Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 3.7e-157 558.1 276 100.0
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 2.9e-154 548.5 276 98.6
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 4.7e-96 355.1 264 73.1
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 3.0e-90 335.9 242 74.4
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 3.0e-90 335.9 289 68.2
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.7e-67 259.6 265 57.0
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.6e-64 250.4 265 55.1
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.8e-63 246.9 265 55.5
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 3.2e-60 236.1 277 54.9
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.2e-43 181.0 273 46.2
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.7e-43 179.9 310 41.9
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.1e-41 174.5 280 40.0
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 9.1e-39 164.9 267 40.8
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 9.1e-39 164.9 310 40.3
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.1e-36 157.9 223 44.8
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.2e-36 156.4 293 38.6
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 9.4e-36 154.8 309 36.6
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.2e-35 154.5 299 39.5
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-35 154.5 136 63.2
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 1.6e-35 154.1 212 45.8
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 2.7e-35 153.3 173 52.6
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.7e-35 152.5 269 39.8
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.0e-34 151.4 274 40.9
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 5.1e-34 149.1 253 40.3
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.1e-33 147.9 135 61.5
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.1e-33 147.9 137 62.0
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 3.3e-33 146.4 238 43.3
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 4.4e-33 146.0 240 42.1
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 4.4e-33 146.0 225 44.9
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.7e-32 144.1 180 50.0
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 2.2e-32 143.7 161 50.9
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 8.2e-32 141.7 274 38.3
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 1.4e-31 141.0 194 47.4
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 1.4e-31 141.0 194 47.4
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 1.4e-31 141.0 229 41.9
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.8e-31 140.6 271 39.9
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 1.8e-31 140.6 179 49.7
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 4.1e-31 139.4 162 51.9
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 5.3e-31 139.0 162 49.4
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 7.0e-31 138.7 200 45.5
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 9.1e-31 138.3 268 39.2
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.2e-30 137.9 138 56.5
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.2e-30 137.9 125 60.0
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.2e-30 137.9 269 39.0
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-30 137.9 174 51.1
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.2e-30 137.9 221 43.4
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-30 137.5 174 50.0
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.0e-30 137.1 272 38.2
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.9e-30 135.6 266 38.7
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 5.9e-30 135.6 174 50.0
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 7.7e-30 135.2 266 38.3
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 1.0e-29 134.8 125 58.4
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 1.3e-29 134.4 153 48.4
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 3.8e-29 132.9 279 35.1
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 5.0e-29 132.5 143 52.4
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 5.0e-29 132.5 229 41.9
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 6.5e-29 132.1 217 41.5
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.5e-29 131.7 268 37.7
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.9e-28 130.6 228 40.8
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 2.5e-28 130.2 141 55.3
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 3.2e-28 129.8 229 38.4
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 4.2e-28 129.4 117 56.4
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 5.5e-28 129.0 153 47.7
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 9.4e-28 128.3 158 48.7
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.2e-27 127.9 181 45.3
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 1.6e-27 127.5 272 37.1
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 4.7e-27 125.9 264 38.6
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 2.3e-26 123.6 163 49.1
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 3.9e-26 122.9 232 39.2
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 1.1e-25 121.3 128 50.8
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.1e-25 121.3 119 52.1
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 1.5e-25 120.9 84 67.9
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.5e-25 120.9 241 37.8
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 9.7e-25 118.2 65 83.1
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 9.7e-25 118.2 147 44.2
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 1.3e-24 117.9 241 36.5
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 2.8e-24 116.7 129 51.2
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 2.8e-24 116.7 133 50.4
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 4.8e-24 115.9 207 39.1
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.1e-23 113.2 232 33.6
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.0e-22 110.5 173 39.3
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.6e-22 110.2 231 35.1
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 3.5e-22 109.8 149 49.0
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 5.9e-22 109.0 227 37.4
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 5.9e-22 109.0 209 34.9
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 7.7e-22 108.6 220 34.1
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 1.3e-21 107.8 137 45.3
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.3e-21 107.8 237 36.3
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 1.7e-21 107.5 286 33.2
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.8e-21 106.3 111 54.1
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.1e-20 104.8 116 52.6
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.1e-20 104.8 110 55.5
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.1e-20 104.8 72 66.7
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 1.1e-20 104.8 72 66.7
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 1.5e-20 104.4 73 65.8
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 7.2e-20 102.1 191 36.1
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 1.2e-19 101.3 208 40.9
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 2.1e-19 100.5 81 58.0
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 3.6e-19 99.8 164 39.0
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 4.7e-19 99.4 146 41.1
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 6.1e-19 99.0 165 39.4
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.4e-18 97.8 165 41.8
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 1.8e-18 97.4 117 47.9
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.3e-18 97.1 177 36.2
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 3.0e-18 96.7 129 47.3
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 8.8e-18 95.1 122 46.7
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 8.8e-18 95.1 122 46.7
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 1.2e-17 94.7 148 41.9
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.2e-17 94.7 81 55.6
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.5e-17 94.4 72 59.7
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 2.6e-17 93.6 92 53.3
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.3e-17 93.2 129 40.3
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 4.4e-17 92.8 166 40.4
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 4.4e-17 92.8 166 41.6
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.4e-17 92.8 219 35.2
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 5.7e-17 92.4 115 44.3
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.7e-17 91.7 219 34.2
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-16 91.3 152 41.4
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 2.2e-16 90.5 219 33.8
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 2.2e-16 90.5 246 32.1
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 2.8e-16 90.1 134 46.3
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.8e-16 90.1 117 43.6
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.7e-16 89.7 135 43.7
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.3e-16 89.0 170 40.6
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 1.1e-15 88.2 121 43.8
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.1e-15 88.2 170 38.8
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 7.0e-15 85.5 183 34.4
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 1.2e-14 84.7 171 40.4
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.2e-14 84.7 123 39.8
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.6e-14 84.3 121 43.8
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 2.7e-14 83.6 97 50.5
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 1.7e-13 80.9 82 58.5
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 2.9e-13 80.1 48 72.9
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.9e-12 77.4 120 42.5
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 1.9e-12 77.4 203 33.5
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 3.2e-12 76.6 143 39.2
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 4.2e-12 76.3 109 43.1
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 5.5e-12 75.9 135 40.7
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 7.2e-12 75.5 124 40.3
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 7.2e-12 75.5 171 33.3
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 3.6e-11 73.2 177 34.5
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.8e-10 70.9 147 38.8
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 1.8e-10 70.9 102 43.1
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.3e-10 70.5 109 39.4
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 3.0e-10 70.1 120 39.2
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 5.2e-10 69.3 178 33.7
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 6.8e-10 68.9 145 36.6
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 1.5e-09 67.8 133 36.1
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 2.6e-09 67.0 144 35.4
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 2.6e-09 67.0 101 39.6
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 5.7e-09 65.9 112 40.2
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 5.7e-09 65.9 112 40.2
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 9.8e-09 65.1 158 31.0
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 9.8e-09 65.1 42 66.7
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 1.3e-08 64.7 203 29.6
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 4.1e-07 59.7 114 37.7
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 9.1e-07 58.5 79 44.3
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 9.1e-07 58.5 83 44.6
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 1.2e-06 58.2 82 40.2
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 1.6e-06 57.8 138 33.3
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 1.6e-06 57.8 158 32.3
Ciclev10003675m.g Citrus clementina HOM05D004520 ORTHO05D005520 2.0e-06 57.4 166 33.7
Glyma.04G106800 Glycine max HOM05D016564 ORTHO05D019006 2.0e-06 57.4 150 36.0
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 2.0e-06 57.4 79 40.5
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 2.7e-06 57.0 80 40.0
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 2.7e-06 57.0 147 28.6
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 3.5e-06 56.6 83 41.0
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 3.5e-06 56.6 100 36.0
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 4.5e-06 56.2 163 31.3
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 4.5e-06 56.2 102 38.2
SMO137G0033 Selaginella moellendorffii HOM05D028425 ORTHO05D005520 5.9e-06 55.8 90 41.1
CARHR191140 Cardamine hirsuta HOM05D004622 ORTHO05D005431 7.7e-06 55.5 133 27.8
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 7.7e-06 55.5 121 33.1
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 7.7e-06 55.5 127 31.5


User provided reference genes

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