Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 2.3e-57 225.3 112 100.0
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 3.3e-40 168.3 118 73.7
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.4e-35 152.9 117 69.2
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 5.5e-35 151.0 118 68.6
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.8e-33 146.0 118 66.9
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 5.1e-33 144.4 114 69.3
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 8.8e-33 143.7 118 65.3
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 2.2e-31 139.0 117 65.0
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 2.4e-30 135.6 117 59.8
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.1e-30 133.7 117 63.2
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 3.4e-29 131.7 114 64.0
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 7.7e-29 130.6 115 61.7
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 1.0e-28 130.2 112 62.5
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.7e-28 129.4 112 60.7
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 3.8e-28 128.3 112 62.5
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.8e-28 128.3 116 58.6
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 8.5e-28 127.1 112 62.5
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 8.5e-28 127.1 113 61.9
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 1.4e-27 126.3 112 63.4
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.4e-27 126.3 111 59.5
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.2e-27 125.2 117 57.3
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 4.2e-27 124.8 130 53.8
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.6e-26 121.7 114 59.6
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.7e-26 121.3 111 59.5
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 4.7e-26 121.3 111 59.5
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 8.0e-26 120.6 119 58.0
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 1.5e-24 116.3 119 58.8
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 1.5e-24 116.3 120 57.5
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 2.6e-24 115.5 120 55.0
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 2.6e-24 115.5 120 58.3
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 3.7e-23 111.7 118 55.9
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 4.8e-23 111.3 121 54.5
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 6.3e-23 110.9 85 65.9
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 1.8e-22 109.4 117 53.8
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 1.8e-22 109.4 123 56.1
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 2.4e-22 109.0 108 56.5
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 4.1e-22 108.2 137 51.8
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 7.0e-22 107.5 118 52.5
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 1.6e-21 106.3 116 57.8
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.6e-21 105.5 111 51.4
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 3.5e-21 105.1 119 55.5
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 7.7e-21 104.0 111 52.3
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.7e-20 102.8 115 52.2
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.2e-20 102.4 110 57.3
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 3.8e-20 101.7 139 48.9
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 5.0e-20 101.3 79 63.3
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 8.5e-20 100.5 110 56.4
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.1e-19 100.1 79 63.3
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.1e-19 100.1 105 55.2
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 1.5e-19 99.8 110 50.9
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.5e-19 99.8 110 55.5
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 4.2e-19 98.2 110 51.8
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 7.2e-19 97.4 119 49.6
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 7.2e-19 97.4 119 49.6
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 9.4e-19 97.1 118 50.8
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.6e-18 96.3 119 48.7
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 2.1e-18 95.9 119 50.4
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.7e-18 95.5 125 52.0
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 3.6e-18 95.1 76 63.2
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 3.6e-18 95.1 85 57.6
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 4.7e-18 94.7 123 47.2
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.7e-18 94.7 85 57.6
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 8.0e-18 94.0 111 51.4
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 8.0e-18 94.0 111 52.3
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 8.0e-18 94.0 111 52.3
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 8.0e-18 94.0 111 52.3
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 8.0e-18 94.0 142 44.4
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.0e-17 93.6 74 63.5
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.4e-17 93.2 112 53.6
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 2.3e-17 92.4 119 49.6
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.0e-17 92.0 111 52.3
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 5.2e-17 91.3 111 51.4
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 5.2e-17 91.3 116 47.4
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.2e-16 90.1 114 44.7
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.2e-16 90.1 74 59.5
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.0e-16 89.4 88 56.8
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 2.0e-16 89.4 119 45.4
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 3.3e-16 88.6 86 54.7
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 3.3e-16 88.6 117 48.7
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 5.7e-16 87.8 114 50.9
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 7.5e-16 87.4 80 61.2
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 7.5e-16 87.4 76 60.5
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 1.3e-15 86.7 74 58.1
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 2.2e-15 85.9 84 56.0
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 2.2e-15 85.9 148 39.9
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 2.2e-15 85.9 116 48.3
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 2.8e-15 85.5 103 46.6
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 3.7e-15 85.1 124 48.4
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 1.1e-14 83.6 81 59.3
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 1.8e-14 82.8 109 49.5
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 1.8e-14 82.8 109 49.5
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 2.4e-14 82.4 113 46.9
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 4.1e-14 81.6 87 52.9
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 5.3e-14 81.3 119 44.5
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 7.0e-14 80.9 124 41.9
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 7.0e-14 80.9 116 44.0
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.0e-14 80.9 85 55.3
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.2e-13 80.1 83 57.8
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 1.2e-13 80.1 81 53.1
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 2.0e-13 79.3 118 47.5
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 4.5e-13 78.2 113 43.4
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 4.5e-13 78.2 114 47.4
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 4.5e-13 78.2 116 43.1
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 4.5e-13 78.2 110 46.4
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 5.9e-13 77.8 108 50.9
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 5.9e-13 77.8 72 56.9
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 7.7e-13 77.4 81 50.6
Actinidia08253 Actinidia chinensis HOM05D004288 ORTHO05D004997 6.5e-12 74.3 77 59.7
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 6.5e-12 74.3 104 46.2
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 6.5e-12 74.3 111 42.3
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 6.5e-12 74.3 79 51.9
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 8.5e-12 73.9 133 37.6
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.1e-11 73.6 122 39.3
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 1.1e-11 73.6 111 43.2
Potri.009G089900 Populus trichocarpa HOM05D004288 ORTHO05D004997 2.5e-11 72.4 112 40.2
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 2.5e-11 72.4 110 42.7
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 4.2e-11 71.6 117 41.0
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 5.5e-11 71.2 109 41.3
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 5.5e-11 71.2 106 42.5
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 9.4e-11 70.5 111 45.0
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 9.4e-11 70.5 57 61.4
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 1.2e-10 70.1 110 41.8
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 1.6e-10 69.7 50 68.0
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 1.6e-10 69.7 96 45.8
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 4.7e-10 68.2 107 42.1
Lalb_Chr23g0267451 Lupinus albus HOM05D004288 ORTHO05D004997 4.7e-10 68.2 112 42.0
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 6.1e-10 67.8 63 63.5
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 8.0e-10 67.4 49 59.2
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 8.0e-10 67.4 66 51.5
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 8.0e-10 67.4 110 40.9
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.0e-09 67.0 63 63.5
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 1.4e-09 66.6 68 51.5
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 1.8e-09 66.2 41 73.2
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 1.8e-09 66.2 61 59.0
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 2.3e-09 65.9 53 62.3
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 3.0e-09 65.5 58 58.6
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 4.0e-09 65.1 94 40.4
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 4.0e-09 65.1 98 39.8
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 6.8e-09 64.3 43 67.4
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 8.8e-09 63.9 47 61.7
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.2e-08 63.5 66 56.1
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 1.5e-08 63.2 45 62.2
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 3.4e-08 62.0 48 62.5
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 3.4e-08 62.0 50 62.0
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 4.4e-08 61.6 51 60.8
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 4.4e-08 61.6 50 60.0
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 4.4e-08 61.6 50 60.0
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 4.4e-08 61.6 111 37.8
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 4.4e-08 61.6 38 71.1
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 4.4e-08 61.6 96 41.7
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 7.5e-08 60.8 55 56.4
AUR62041736 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.7e-07 59.7 64 54.7
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 2.2e-07 59.3 59 49.2
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 2.2e-07 59.3 50 58.0
HPP92_013399 Vanilla planifolia HOM05D059585 ORTHO05D004997 3.7e-07 58.5 111 36.0
PGR083G0410 Punica granatum HOM05D004288 ORTHO05D004997 4.8e-07 58.2 89 43.8
Psat6g015640 Pisum sativum HOM05D004288 ORTHO05D004997 6.3e-07 57.8 100 40.0
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.1e-06 57.0 72 43.1
SEGI_20698 Sequoiadendron giganteum HOM05D057447 ORTHO05D050965 9.1e-06 53.9 89 38.2


User provided reference genes

Program Settings