Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 2.1e-230 802.0 396 100.0
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 5.5e-122 441.8 360 65.8
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 5.7e-119 431.8 354 65.3
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.3e-118 430.6 338 70.7
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 2.2e-118 429.9 358 66.8
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 5.3e-117 425.2 358 66.5
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.3e-115 420.6 362 66.0
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.3e-115 420.6 362 66.0
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 1.9e-114 416.8 355 62.5
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 1.9e-114 416.8 371 62.5
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 3.2e-114 416.0 353 63.2
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.5e-111 407.1 372 60.8
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 2.6e-111 406.4 364 64.0
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 5.3e-109 398.7 355 64.2
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.5e-108 396.0 369 58.5
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 3.5e-108 396.0 347 62.2
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 6.5e-107 391.7 368 58.4
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.5e-106 390.6 367 58.3
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 9.4e-106 387.9 352 60.8
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 2.7e-105 386.3 372 60.5
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 2.7e-105 386.3 364 58.5
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.7e-105 385.6 362 58.0
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.4e-104 384.0 368 57.9
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 1.8e-104 383.6 356 62.6
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 3.0e-104 382.9 345 61.4
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 3.4e-103 379.4 367 59.9
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 1.7e-102 377.1 353 61.8
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 8.3e-102 374.8 352 59.4
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 4.1e-101 372.5 357 58.3
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.0e-100 370.2 354 59.6
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.3e-99 367.5 369 58.0
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.3e-99 366.7 355 59.4
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.5e-95 354.0 365 55.6
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.7e-94 350.5 357 58.8
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 6.3e-94 348.6 361 56.0
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.1e-93 347.8 352 56.8
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 9.2e-93 344.7 360 56.1
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 4.5e-92 342.4 360 55.0
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 1.0e-91 341.3 390 52.1
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 3.9e-91 339.3 374 54.5
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.6e-89 334.0 366 54.9
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 4.7e-89 332.4 367 52.9
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 6.1e-89 332.0 356 55.3
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 6.8e-88 328.6 369 53.1
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.5e-87 327.4 367 52.6
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.7e-86 323.9 365 54.0
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 1.7e-86 323.9 359 51.0
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 1.7e-86 323.9 370 51.6
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.1e-85 321.2 360 51.4
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 7.0e-85 318.5 350 51.1
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 2.0e-84 317.0 383 51.4
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 7.8e-84 315.1 372 53.8
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 1.0e-83 314.7 362 50.8
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.0e-83 314.7 361 50.4
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 3.0e-83 313.2 363 51.0
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 9.5e-82 308.1 346 51.2
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 2.1e-81 307.0 370 50.0
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.1e-81 307.0 400 45.8
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 6.2e-81 305.4 360 52.2
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 3.1e-80 303.1 357 52.4
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 8.9e-80 301.6 350 53.4
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 2.0e-79 300.4 353 49.0
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.0e-79 300.4 376 49.5
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.3e-78 297.7 359 48.2
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.3e-78 297.7 352 50.0
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 1.3e-78 297.7 433 44.3
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.7e-78 297.4 368 48.6
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.4e-77 294.3 369 49.6
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 2.4e-77 293.5 369 46.6
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 9.2e-77 291.6 359 48.2
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 9.2e-77 291.6 348 48.0
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 7.8e-76 288.5 369 47.7
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.0e-75 288.1 360 47.5
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.0e-75 288.1 349 48.1
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 1.0e-75 288.1 359 51.3
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 3.9e-75 286.2 359 47.6
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.9e-75 286.2 352 48.3
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 8.6e-75 285.0 354 50.0
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.9e-74 283.9 357 47.6
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 7.3e-74 282.0 349 47.3
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 7.3e-74 282.0 349 47.3
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 2.1e-73 280.4 349 47.3
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 2.8e-73 280.0 381 44.1
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 6.8e-72 275.4 321 49.5
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.4e-71 272.7 364 47.0
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 9.9e-71 271.6 358 46.4
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 1.7e-70 270.8 362 45.0
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 4.9e-70 269.2 362 45.3
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 1.4e-69 267.7 358 48.6
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.5e-66 257.7 339 46.9
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 5.6e-66 255.8 384 44.5
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 9.5e-66 255.0 349 48.1
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 1.6e-65 254.2 419 43.2
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.6e-65 254.2 350 47.1
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 3.6e-65 253.1 407 42.8
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.6e-65 253.1 292 58.9
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.1e-64 251.5 245 64.1
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 8.9e-64 248.4 385 44.2
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 2.0e-63 247.3 348 46.0
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 2.0e-63 247.3 358 46.4
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 9.9e-63 245.0 351 44.7
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 6.4e-62 242.3 190 65.3
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 2.1e-60 237.3 267 53.2
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.9e-58 230.7 366 40.2
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 8.1e-57 225.3 384 40.9
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 6.9e-56 222.2 363 42.1
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 4.4e-55 219.5 280 47.1
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 1.3e-54 218.0 363 41.0
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 3.9e-51 206.5 364 40.9
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 2.5e-50 203.8 345 41.2
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 3.6e-49 199.9 206 53.4
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.1e-48 198.4 186 55.9
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 9.9e-47 191.8 202 53.5
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 8.4e-46 188.7 338 39.3
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.9e-45 187.6 269 44.6
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.9e-42 177.6 366 37.2
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 3.3e-42 176.8 196 52.0
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 2.1e-41 174.1 371 34.5
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 4.8e-41 172.9 364 36.0
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 1.2e-39 168.3 357 34.2
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 4.9e-38 162.9 132 55.3
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 3.5e-36 156.8 184 48.4
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 4.6e-36 156.4 354 35.9
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 6.7e-35 152.5 113 69.9
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 3.3e-34 150.2 224 43.3
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 1.4e-29 134.8 192 43.8
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.4e-21 108.2 102 58.8
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 3.0e-19 100.5 175 34.3
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 5.1e-19 99.8 162 36.4
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.1e-18 98.6 170 34.7
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 2.5e-18 97.4 359 30.1
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.7e-18 96.3 145 37.9
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 5.7e-18 96.3 98 53.1
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 9.7e-18 95.5 145 38.6
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.2e-17 94.4 161 34.8
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 2.8e-17 94.0 350 27.4
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 5.3e-16 89.7 165 33.3
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 7.9e-12 75.9 97 41.2
Dinv07827 Davidia involucrata HOM05D005715 ORTHO05D007160 3.9e-11 73.6 98 49.0
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 1.3e-09 68.6 98 45.9
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 1.7e-09 68.2 176 28.4
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 1.7e-09 68.2 176 28.4
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 1.7e-09 68.2 176 28.4
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 1.7e-09 68.2 176 28.4
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 1.7e-09 68.2 176 28.4
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 2.2e-09 67.8 177 27.7
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 3.7e-09 67.0 176 27.8
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 8.2e-09 65.9 176 27.8
CDE04G1528 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 1.2e-07 62.0 234 26.9
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 7.7e-07 59.3 227 25.1
TAR374G1031 Trochodendron aralioides HOM05D001735 ORTHO05D001640 1.0e-06 58.9 220 25.5
Nn4g22410 Nelumbo nucifera HOM05D001735 ORTHO05D001640 1.7e-06 58.2 236 23.7
TAR371G0269 Trochodendron aralioides HOM05D001735 ORTHO05D001640 8.5e-06 55.8 222 27.9


User provided reference genes

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