Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 1.3e-31 139.0 68 100.0
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 2.7e-21 104.8 50 100.0
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 1.2e-11 72.8 44 70.5
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 4.4e-11 70.9 43 72.1
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 1.3e-10 69.3 43 72.1
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 4.8e-10 67.4 43 67.4
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.1e-09 66.2 40 77.5
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 1.4e-09 65.9 43 62.8
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 1.4e-09 65.9 43 65.1
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 2.4e-09 65.1 43 65.1
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 2.4e-09 65.1 43 65.1
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 3.1e-09 64.7 43 65.1
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 3.1e-09 64.7 43 60.5
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 3.1e-09 64.7 43 67.4
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 5.4e-09 63.9 43 62.8
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 5.4e-09 63.9 43 62.8
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 5.4e-09 63.9 43 60.5
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 9.1e-09 63.2 43 60.5
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.2e-08 62.8 43 65.1
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 1.2e-08 62.8 43 58.1
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 1.2e-08 62.8 40 65.0
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 1.2e-08 62.8 43 62.8
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 2.0e-08 62.0 40 65.0
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 2.0e-08 62.0 43 60.5
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 2.7e-08 61.6 43 62.8
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 2.7e-08 61.6 43 60.5
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 3.5e-08 61.2 43 58.1
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 3.5e-08 61.2 43 58.1
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 3.5e-08 61.2 43 58.1
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 3.5e-08 61.2 43 58.1
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 4.5e-08 60.8 59 50.8
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 4.5e-08 60.8 40 62.5
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 4.5e-08 60.8 43 60.5
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 4.5e-08 60.8 43 62.8
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 5.9e-08 60.5 40 62.5
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 5.9e-08 60.5 43 58.1
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 5.9e-08 60.5 43 58.1
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 7.7e-08 60.1 40 60.0
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 7.7e-08 60.1 40 62.5
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 7.7e-08 60.1 40 57.5
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 7.7e-08 60.1 43 55.8
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.0e-07 59.7 43 62.8
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 1.0e-07 59.7 43 60.5
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 1.0e-07 59.7 40 62.5
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.0e-07 59.7 43 60.5
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.3e-07 59.3 43 62.8
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.3e-07 59.3 43 55.8
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 1.7e-07 58.9 43 55.8
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 2.3e-07 58.5 43 58.1
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 2.9e-07 58.2 43 55.8
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 3.8e-07 57.8 43 58.1
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 3.8e-07 57.8 43 53.5
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 3.8e-07 57.8 43 58.1
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.8e-07 57.8 43 55.8
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 3.8e-07 57.8 43 53.5
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 3.8e-07 57.8 43 53.5
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 5.0e-07 57.4 43 55.8
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 5.0e-07 57.4 43 53.5
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 6.6e-07 57.0 43 53.5
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.6e-07 57.0 40 57.5
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 8.6e-07 56.6 43 51.2
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.5e-06 55.8 40 57.5
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.5e-06 55.8 43 51.2
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.5e-06 55.8 40 60.0
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.5e-06 55.8 40 60.0
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 1.9e-06 55.5 43 48.8
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 1.9e-06 55.5 43 55.8
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 2.5e-06 55.1 40 55.0
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 2.5e-06 55.1 40 55.0
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 2.5e-06 55.1 43 55.8
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 2.5e-06 55.1 43 58.1
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 2.5e-06 55.1 43 51.2
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.3e-06 54.7 40 55.0
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 4.2e-06 54.3 40 57.5
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 4.2e-06 54.3 40 57.5
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 4.2e-06 54.3 40 57.5
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 7.2e-06 53.5 43 48.8
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 7.2e-06 53.5 40 55.0
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 7.2e-06 53.5 43 48.8
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 7.2e-06 53.5 43 48.8
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 7.2e-06 53.5 43 51.2
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 9.5e-06 53.1 43 48.8
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 9.5e-06 53.1 43 48.8


User provided reference genes

Program Settings