Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 1.5e-77 292.7 144 100.0
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 1.9e-40 169.5 110 77.3
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 1.6e-39 166.4 117 78.6
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 2.1e-39 166.0 108 81.5
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 2.8e-39 165.6 116 70.7
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 1.1e-38 163.7 119 72.3
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 4.0e-38 161.8 113 77.9
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 2.6e-37 159.1 108 75.0
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 2.6e-37 159.1 114 75.4
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 9.9e-37 157.1 113 73.5
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 1.7e-36 156.4 110 79.1
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 2.9e-36 155.6 114 70.2
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 4.9e-36 154.8 115 73.9
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 5.4e-35 151.4 117 69.2
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.2e-34 150.2 106 77.4
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 6.0e-34 147.9 108 73.1
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 7.8e-34 147.5 105 73.3
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 7.8e-34 147.5 106 75.5
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 5.1e-33 144.8 119 68.9
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 1.1e-32 143.7 109 71.6
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 4.3e-32 141.7 114 66.7
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 7.3e-32 141.0 105 72.4
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 2.1e-31 139.4 115 67.8
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 2.8e-31 139.0 108 68.5
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 3.6e-31 138.7 93 82.8
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 4.7e-31 138.3 108 68.5
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 4.7e-31 138.3 102 72.5
Lj1g0004253 Lotus japonicus HOM05D007433 ORTHO05D009199 6.2e-31 137.9 115 65.2
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.4e-30 136.7 111 68.5
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 3.1e-30 135.6 101 68.3
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 4.0e-30 135.2 112 67.9
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 4.0e-30 135.2 112 67.9
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 5.2e-30 134.8 111 68.5
Phvul.009G073600 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 5.2e-30 134.8 114 66.7
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 6.8e-30 134.4 111 67.6
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 6.8e-30 134.4 91 78.0
VMungo1309G0469 Vigna mungo HOM05D007433 ORTHO05D009199 6.8e-30 134.4 114 66.7
Sopen04g031210 Solanum pennellii HOM05D007433 ORTHO05D009199 1.2e-29 133.7 111 65.8
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 1.5e-29 133.3 111 72.1
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 3.4e-29 132.1 112 67.9
RcHm_v2.0_Chr6g0309931 Rosa chinensis HOM05D007433 ORTHO05D009199 7.6e-29 131.0 110 66.4
PGSC0003DMG400004914 Solanum tuberosum HOM05D007433 ORTHO05D009199 1.3e-28 130.2 112 63.4
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 4.9e-28 128.3 112 64.3
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 6.4e-28 127.9 115 64.3
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.1e-27 127.1 107 68.2
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.1e-27 127.1 107 68.2
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.1e-27 127.1 107 68.2
Lalb_Chr11g0062981 Lupinus albus HOM05D007433 ORTHO05D009199 1.9e-27 126.3 111 66.7
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 1.9e-27 126.3 114 65.8
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 1.9e-27 126.3 106 67.9
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 3.2e-27 125.6 87 73.6
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 4.1e-27 125.2 115 66.1
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 1.2e-26 123.6 115 61.7
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 1.2e-26 123.6 108 65.7
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.1e-26 122.9 113 63.7
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.1e-26 122.9 113 61.9
Oeu014281.1 Olea europaea HOM05D007433 ORTHO05D009199 2.1e-26 122.9 94 72.3
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.1e-26 122.9 116 63.8
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 3.5e-26 122.1 114 63.2
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 3.5e-26 122.1 111 59.5
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 4.6e-26 121.7 106 66.0
CAN.G1239.9 Capsicum annuum HOM05D007433 ORTHO05D009199 1.0e-25 120.6 109 59.6
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 1.0e-25 120.6 96 66.7
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 3.0e-25 119.0 109 59.6
Psat5g037160 Pisum sativum HOM05D007433 ORTHO05D009199 6.6e-25 117.9 117 60.7
Lalb_Chr08g0245211 Lupinus albus HOM05D007433 ORTHO05D009199 1.1e-24 117.1 108 63.0
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 1.5e-24 116.7 105 63.8
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.9e-24 116.3 98 63.3
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 2.5e-24 115.9 108 59.3
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.5e-24 115.9 98 63.3
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 2.5e-24 115.9 98 63.3
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 2.5e-24 115.9 107 58.9
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 3.6e-23 112.1 124 57.3
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 6.2e-23 111.3 77 71.4
Sc02g0008080 Simmondsia chinensis HOM05D007433 ORTHO05D009199 1.8e-22 109.8 105 60.0
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 1.2e-21 107.1 83 66.3
Migut.C00395 Erythranthe guttata HOM05D007433 ORTHO05D009199 1.2e-21 107.1 119 54.6
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 6.4e-20 101.3 117 53.0
Glyma.17G233300 Glycine max HOM05D007433 ORTHO05D009199 1.4e-19 100.1 109 57.8
Ca_15891_v3 Cicer arietinum L. HOM05D007433 ORTHO05D009199 1.2e-18 97.1 111 56.8
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 2.1e-18 96.3 79 62.0
VMungo0647G2383 Vigna mungo HOM05D007433 ORTHO05D009199 8.7e-17 90.9 107 52.3
Atru.chr13.863 Acer truncatum HOM05D007433 ORTHO05D009199 2.5e-16 89.4 89 60.7
Phvul.001G029300 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 4.3e-16 88.6 107 51.4
Hma1.2p1_3243F.1_g334320 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 5.6e-16 88.2 116 51.7
Phvul.011G135200 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 1.5e-13 80.1 90 54.4
DCAR_008860 Daucus carota HOM05D007433 ORTHO05D009199 2.9e-12 75.9 92 52.2
Potri.014G007000 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.6e-10 70.1 111 44.1
Gohir.A02G150000 Gossypium hirsutum HOM05D007433 ORTHO05D009199 4.6e-10 68.6 75 52.0
Zm00001eb217410 Zea mays HOM05D007433 ORTHO05D009199 6.0e-10 68.2 92 47.8
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 1.0e-09 67.4 84 46.4
Manes.13G109500 Manihot esculenta HOM05D007433 ORTHO05D009199 1.0e-09 67.4 89 46.1
Gorai.003G032000 Gossypium raimondii HOM05D007433 ORTHO05D009199 3.0e-09 65.9 72 51.4
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 3.9e-09 65.5 98 41.8
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 6.7e-09 64.7 92 45.7
COL.COLO4_11609 Corchorus olitorius HOM05D007433 ORTHO05D009199 6.7e-09 64.7 66 53.0
Cfa004384 Carpinus fangiana HOM05D007433 ORTHO05D009199 8.7e-09 64.3 94 43.6
Gohir.D03G030400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.5e-08 63.5 71 50.7
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 1.5e-08 63.5 54 57.4
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.5e-08 63.5 59 57.6
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 1.9e-08 63.2 54 59.3
Atru.chr3.1055 Acer truncatum HOM05D007433 ORTHO05D009199 2.5e-08 62.8 73 54.8
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 2.5e-08 62.8 48 62.5
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 5.6e-08 61.6 59 55.9
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 5.6e-08 61.6 70 47.1
Thecc.01G075800 Theobroma cacao HOM05D007433 ORTHO05D009199 9.6e-08 60.8 73 46.6
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 1.6e-07 60.1 54 50.0
SalBow3G4039 Salvia bowleyana HOM05D007433 ORTHO05D009199 1.6e-07 60.1 48 60.4
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.6e-07 60.1 54 57.4
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 2.1e-07 59.7 53 54.7
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 2.1e-07 59.7 66 50.0
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.8e-07 59.3 47 59.6
Haze_15029 Corylus avellana HOM05D007433 ORTHO05D020523 2.8e-07 59.3 101 40.6
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 3.7e-07 58.9 48 56.2
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 3.7e-07 58.9 60 51.7
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 4.8e-07 58.5 52 53.8
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 4.8e-07 58.5 53 56.6
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.2e-07 58.2 54 53.7
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 6.2e-07 58.2 52 48.1
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 6.2e-07 58.2 51 56.9
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 6.2e-07 58.2 48 56.2
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 6.2e-07 58.2 48 56.2
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 6.2e-07 58.2 54 50.0
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 6.2e-07 58.2 54 53.7
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 6.2e-07 58.2 50 54.0
Prupe.6G217400 Prunus persica HOM05D020383 ORTHO05D022607 6.2e-07 58.2 48 62.5
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 6.2e-07 58.2 48 56.2
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 8.1e-07 57.8 46 58.7
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 8.1e-07 57.8 46 63.0
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 8.1e-07 57.8 59 52.5
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 8.1e-07 57.8 52 51.9
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 8.1e-07 57.8 48 58.3
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.1e-06 57.4 57 52.6
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.1e-06 57.4 52 51.9
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.1e-06 57.4 51 52.9
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.1e-06 57.4 48 60.4
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.1e-06 57.4 53 47.2
Zm00001eb268340 Zea mays HOM05D028875 ORTHO05D003347 1.1e-06 57.4 42 59.5
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.4e-06 57.0 90 41.1
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.4e-06 57.0 49 57.1
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 1.4e-06 57.0 48 58.3
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.4e-06 57.0 59 50.8
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.4e-06 57.0 48 60.4
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.4e-06 57.0 51 54.9
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.4e-06 57.0 63 46.0
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 1.4e-06 57.0 53 47.2
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.4e-06 57.0 53 47.2
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.4e-06 57.0 53 47.2
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.4e-06 57.0 52 53.8
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.8e-06 56.6 50 56.0
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.8e-06 56.6 47 57.4
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.8e-06 56.6 57 52.6
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.8e-06 56.6 55 52.7
Zm00001eb044240 Zea mays HOM05D028875 ORTHO05D003347 1.8e-06 56.6 42 59.5
Eucgr.H02327 Eucalyptus grandis HOM05D007433 ORTHO05D009199 2.4e-06 56.2 68 42.6
FvH4_1g18141 Fragaria vesca HOM05D020383 ORTHO05D022607 2.4e-06 56.2 65 41.5
QL06p038982 Quercus lobata HOM05D007433 ORTHO05D009199 2.4e-06 56.2 71 43.7
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.1e-06 55.8 48 56.2
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.1e-06 55.8 48 56.2
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.1e-06 55.8 48 58.3
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.3e-06 55.1 68 44.1
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.3e-06 55.1 48 56.2
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.3e-06 55.1 48 56.2
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.3e-06 55.1 48 56.2
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 5.3e-06 55.1 59 52.5
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 6.9e-06 54.7 48 56.2
Os03g0675500 Oryza sativa ssp. japonica HOM05D007433 ORTHO05D003347 6.9e-06 54.7 73 41.1
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 6.9e-06 54.7 48 58.3
Zm00001eb329750 Zea mays HOM05D028875 ORTHO05D003347 6.9e-06 54.7 40 60.0
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 9.0e-06 54.3 57 52.6
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 9.0e-06 54.3 47 57.4
RcHm_v2.0_Chr2g0108601 Rosa chinensis HOM05D020383 ORTHO05D022607 9.0e-06 54.3 63 42.9
Sopen02g036680 Solanum pennellii HOM05D016189 ORTHO05D009199 9.0e-06 54.3 64 46.9
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 9.0e-06 54.3 57 50.9
Zm00001eb051570 Zea mays HOM05D028875 ORTHO05D003347 9.0e-06 54.3 40 60.0


User provided reference genes

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