Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 8.8e-142 506.9 251 100.0
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 1.9e-104 382.9 246 78.5
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 4.0e-102 375.2 229 79.9
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 1.3e-100 370.2 232 78.0
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 2.2e-100 369.4 232 78.0
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 4.2e-99 365.2 246 76.0
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 7.1e-99 364.4 231 79.2
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 6.6e-97 357.8 235 74.5
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 1.5e-96 356.7 200 87.5
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 4.3e-96 355.1 238 73.9
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 2.8e-95 352.4 229 76.0
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 4.4e-93 345.1 238 75.6
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 1.7e-92 343.2 229 76.0
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 4.9e-92 341.7 240 74.2
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 1.9e-91 339.7 246 70.7
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 3.2e-91 339.0 242 72.7
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 4.2e-91 338.6 239 74.1
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 7.1e-91 337.8 229 74.2
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.0e-89 334.0 245 71.8
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 1.7e-89 333.2 213 78.4
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.7e-89 333.2 233 71.2
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 8.7e-89 330.9 212 76.9
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 1.1e-88 330.5 231 73.2
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.5e-88 330.1 229 72.5
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 1.9e-88 329.7 236 71.2
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.8e-87 325.1 237 70.0
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 4.8e-87 325.1 237 70.0
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 8.1e-87 324.3 236 69.5
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.1e-86 323.9 237 70.0
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.1e-86 323.9 234 70.9
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 3.1e-86 322.4 226 73.0
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 3.1e-86 322.4 236 71.2
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 5.3e-86 321.6 246 68.7
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 9.0e-86 320.9 240 67.5
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 2.0e-85 319.7 220 69.5
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 4.5e-85 318.5 242 66.5
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 7.6e-85 317.8 232 71.6
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 9.9e-85 317.4 218 72.0
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 1.3e-84 317.0 232 71.6
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 2.2e-84 316.2 260 65.4
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 4.9e-84 315.1 242 65.7
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 6.4e-84 314.7 242 66.9
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 2.4e-83 312.8 268 65.7
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 7.1e-83 311.2 231 68.0
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 9.3e-83 310.8 232 70.7
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 9.3e-83 310.8 355 50.7
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 1.6e-82 310.1 243 64.6
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 3.5e-82 308.9 216 69.0
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 6.0e-82 308.1 235 66.8
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 7.9e-82 307.8 218 73.9
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 1.0e-81 307.4 220 72.7
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 3.0e-81 305.8 242 65.3
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 5.1e-81 305.1 220 67.7
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 8.7e-81 304.3 233 66.1
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 1.5e-80 303.5 220 69.5
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 9.6e-80 300.8 216 69.4
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 1.3e-79 300.4 220 69.1
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.3e-79 300.4 206 72.3
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.6e-79 300.1 231 65.4
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.1e-78 297.4 236 68.2
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.8e-78 296.6 235 65.5
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 3.1e-78 295.8 240 66.2
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 3.4e-77 292.4 216 66.7
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 5.8e-77 291.6 213 70.4
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 1.3e-76 290.4 226 65.0
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.7e-76 290.0 236 65.3
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 6.5e-76 288.1 235 65.1
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 1.9e-75 286.6 229 66.4
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 9.3e-75 284.3 229 65.9
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 2.7e-74 282.7 231 64.5
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 3.5e-74 282.3 235 61.3
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 4.6e-74 282.0 226 66.4
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 7.9e-74 281.2 233 62.2
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 7.9e-74 281.2 221 63.3
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 1.0e-73 280.8 245 62.0
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.3e-73 280.4 236 61.0
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 2.3e-73 279.6 239 61.5
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 2.3e-73 279.6 294 54.4
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 3.0e-73 279.3 233 62.7
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 3.0e-73 279.3 219 66.7
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 3.9e-73 278.9 230 61.7
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 5.1e-73 278.5 219 65.8
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.5e-72 276.2 219 65.3
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.5e-72 276.2 219 65.3
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 3.3e-72 275.8 232 61.2
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 4.3e-72 275.4 219 63.9
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 4.3e-72 275.4 217 63.1
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 5.7e-72 275.0 233 60.9
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 5.7e-72 275.0 240 62.9
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.4e-72 274.6 213 68.1
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 7.4e-72 274.6 237 61.2
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 2.8e-71 272.7 232 60.3
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 3.1e-70 269.2 217 61.3
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 2.0e-69 266.5 234 62.0
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 4.5e-69 265.4 235 59.6
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 7.6e-69 264.6 220 62.3
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.7e-68 263.5 235 59.1
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 1.2e-66 257.3 223 61.4
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 2.1e-66 256.5 229 59.4
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 2.7e-66 256.1 201 68.2
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 1.3e-65 253.8 222 62.2
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 2.3e-65 253.1 237 59.1
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 8.7e-65 251.1 223 57.8
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 8.7e-65 251.1 244 54.5
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.1e-64 250.8 250 56.0
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 4.3e-64 248.8 189 69.3
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 9.7e-64 247.7 217 59.4
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.3e-63 247.3 220 55.9
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 2.2e-63 246.5 233 57.9
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.8e-62 243.4 169 71.6
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 3.1e-62 242.7 172 72.7
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 1.2e-61 240.7 187 68.4
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 2.0e-61 240.0 217 59.0
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 2.0e-61 240.0 223 57.4
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 2.9e-60 236.1 219 58.9
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 1.4e-59 233.8 205 60.5
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 9.4e-59 231.1 222 55.0
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 1.2e-58 230.7 230 53.5
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 1.8e-57 226.9 165 72.1
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 1.8e-57 226.9 147 77.6
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 5.1e-57 225.3 176 68.2
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 3.7e-55 219.2 191 62.3
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 2.0e-53 213.4 221 52.9
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 1.9e-51 206.8 131 74.8
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 1.9e-51 206.8 238 50.4
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 7.2e-51 204.9 134 76.9
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.6e-50 203.8 196 58.7
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.5e-48 197.2 240 47.5
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.0e-48 196.8 202 55.4
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 4.8e-47 192.2 181 56.4
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 6.3e-47 191.8 181 56.4
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 6.3e-47 191.8 181 56.4
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 1.8e-46 190.3 175 55.4
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 7.7e-45 184.9 372 34.7
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 9.4e-43 177.9 217 47.5
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 2.2e-36 156.8 288 38.2
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 9.2e-22 108.2 115 53.0
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.0e-20 104.8 184 38.6
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 2.9e-20 103.2 81 61.7
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 6.6e-20 102.1 265 32.8
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.0e-17 94.7 94 58.5
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 3.0e-17 93.2 63 71.4
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 5.7e-16 89.0 269 28.6
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 2.2e-15 87.0 139 43.2
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.2e-15 87.0 111 45.0
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 2.9e-15 86.7 248 33.1
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 2.7e-13 80.1 106 47.2
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.7e-13 80.1 99 47.5
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 6.6e-12 75.5 97 50.5
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 8.6e-12 75.1 44 77.3
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 1.9e-11 73.9 55 63.6
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.9e-11 73.9 104 46.2
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 2.5e-11 73.6 144 34.0
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 6.2e-10 68.9 48 68.8


User provided reference genes

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