Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 2.5e-130 468.8 235 100.0
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 9.3e-93 344.0 226 75.7
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 1.1e-85 320.5 230 69.6
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.0e-75 287.3 224 66.5
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 3.7e-65 252.3 225 60.9
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 8.2e-65 251.1 178 69.7
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 1.8e-64 250.0 217 59.4
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 7.2e-61 238.0 225 57.8
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 2.5e-58 229.6 217 53.9
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 9.7e-58 227.6 217 53.5
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 2.8e-57 226.1 231 52.4
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 2.4e-56 223.0 237 51.1
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 4.1e-56 222.2 215 54.9
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 1.3e-54 217.2 227 50.2
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 8.5e-54 214.5 221 50.2
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 1.4e-53 213.8 234 49.1
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 3.2e-53 212.6 235 48.9
Potri.005G149500 Populus trichocarpa HOM05D008077 ORTHO05D010221 7.9e-52 208.0 221 51.6
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 1.4e-51 207.2 213 48.8
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 2.3e-51 206.5 221 50.2
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 3.9e-51 205.7 230 47.4
Cc10_g07800 Coffea canephora HOM05D008077 ORTHO05D010221 7.4e-50 201.4 226 49.6
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 4.8e-49 198.7 238 45.0
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 2.4e-48 196.4 229 46.7
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 4.1e-48 195.7 222 44.6
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 7.0e-48 194.9 223 46.6
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 9.1e-48 194.5 221 48.4
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 2.0e-47 193.4 222 45.5
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 4.5e-47 192.2 163 55.2
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 7.7e-47 191.4 208 47.1
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 1.0e-46 191.0 176 53.4
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 1.0e-46 191.0 215 47.0
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 1.7e-46 190.3 214 47.2
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 6.5e-46 188.3 223 46.6
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 1.1e-45 187.6 157 58.0
Sabra05G0118800 Salix brachista HOM05D008077 ORTHO05D010221 1.9e-45 186.8 165 57.0
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 5.5e-45 185.3 207 44.9
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 2.7e-44 183.0 236 44.5
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 3.6e-44 182.6 236 44.5
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 4.7e-44 182.2 215 46.0
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 6.1e-44 181.8 231 44.2
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 6.1e-44 181.8 212 45.8
arahy.Tifrunner.gnm1.ann1.JS0EE0 Arachis hypogaea HOM05D008077 ORTHO05D010221 1.4e-43 180.6 215 45.6
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 2.3e-43 179.9 210 45.2
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 5.7e-42 175.3 221 45.7
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 7.5e-42 174.9 229 44.5
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 2.2e-41 173.3 228 43.4
FAN24G1375 Fragaria x ananassa HOM05D008077 ORTHO05D010221 8.2e-41 171.4 218 43.6
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 4.1e-40 169.1 228 43.0
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 7.0e-40 168.3 191 44.5
FvH4_2g32450 Fragaria vesca HOM05D008077 ORTHO05D010221 1.2e-39 167.5 218 42.7
FAN20G1346 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.2e-39 167.5 218 43.6
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 1.2e-39 167.5 234 41.0
Hund05263 Selenicereus undatus HOM05D008077 ORTHO05D010221 1.6e-39 167.2 209 45.5
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 2.9e-38 162.9 156 46.2
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 2.5e-37 159.8 200 43.0
FAN27G3028 Fragaria x ananassa HOM05D008077 ORTHO05D010221 4.2e-37 159.1 218 42.2
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 1.2e-36 157.5 211 41.2
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 4.7e-36 155.6 164 50.0
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 1.2e-34 151.0 179 46.4
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 4.4e-34 149.1 218 40.4
Migut.N02805 Erythranthe guttata HOM05D008077 ORTHO05D010221 2.4e-32 143.3 171 45.6
Lj5g0022198 Lotus japonicus HOM05D008077 ORTHO05D010221 1.0e-30 137.9 141 46.8
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 1.0e-30 137.9 152 42.1
unitig_578.g16165 Utricularia gibba HOM05D008077 ORTHO05D010221 3.2e-29 132.9 153 45.1
Sed0028055 Sechium edule HOM05D008077 ORTHO05D010221 3.6e-28 129.4 135 46.7
COL.COLO4_28429 Corchorus olitorius HOM05D008077 ORTHO05D010221 2.3e-27 126.7 137 51.1
MELO3C016846.2 Cucumis melo HOM05D008077 ORTHO05D010221 9.2e-24 114.8 155 43.9
SGA_v2.0_scaffold152G36867 Striga asiatica HOM05D008077 ORTHO05D010221 2.3e-22 110.2 93 57.0
TPR.G13160 Trifolium pratense HOM05D008077 ORTHO05D010221 7.3e-21 105.1 215 33.5
HPP92_006033 Vanilla planifolia HOM05D008077 ORTHO05D010221 2.8e-20 103.2 210 29.0
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 4.7e-20 102.4 188 34.0
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 1.8e-19 100.5 178 33.1
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 2.3e-19 100.1 160 31.2
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 3.0e-19 99.8 173 31.8
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 5.2e-19 99.0 151 36.4
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.5e-18 97.4 151 35.8
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 1.5e-18 97.4 151 35.8
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 2.0e-18 97.1 157 35.7
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 2.6e-18 96.7 155 35.5
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 3.4e-18 96.3 165 36.4
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 3.4e-18 96.3 161 34.8
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 4.4e-18 95.9 166 33.7
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 4.4e-18 95.9 161 32.9
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 5.7e-18 95.5 189 29.6
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 5.7e-18 95.5 152 34.2
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 7.5e-18 95.1 190 28.4
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 7.5e-18 95.1 167 32.9
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 7.5e-18 95.1 166 32.5
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 9.8e-18 94.7 166 33.7
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 1.7e-17 94.0 157 33.1
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 2.2e-17 93.6 166 33.1
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 3.7e-17 92.8 223 29.1
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 6.4e-17 92.0 170 33.5
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 8.3e-17 91.7 191 30.4
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 8.3e-17 91.7 214 30.4
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 8.3e-17 91.7 167 32.9
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 1.1e-16 91.3 224 28.6
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 1.4e-16 90.9 167 32.9
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.8e-16 90.5 200 29.5
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 2.4e-16 90.1 137 36.5
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 2.4e-16 90.1 188 30.9
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 2.4e-16 90.1 147 32.0
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 2.4e-16 90.1 151 35.1
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 3.2e-16 89.7 139 35.3
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 3.2e-16 89.7 214 30.4
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 4.1e-16 89.4 146 32.9
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 5.4e-16 89.0 164 34.1
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 7.0e-16 88.6 200 29.5
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 7.0e-16 88.6 167 31.7
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 7.0e-16 88.6 220 29.1
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 7.0e-16 88.6 176 30.1
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 1.2e-15 87.8 151 31.8
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 1.2e-15 87.8 214 29.4
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 1.6e-15 87.4 190 31.1
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 1.6e-15 87.4 161 31.1
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.0e-15 87.0 179 30.7
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.0e-15 87.0 161 30.4
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 2.7e-15 86.7 174 30.5
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 3.5e-15 86.3 163 32.5
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 5.9e-15 85.5 169 29.6
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 7.8e-15 85.1 139 33.1
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 7.8e-15 85.1 139 31.7
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 1.0e-14 84.7 156 29.5
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.0e-14 84.7 151 33.1
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 1.0e-14 84.7 139 32.4
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 1.0e-14 84.7 156 32.1
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.3e-14 84.3 156 30.1
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 1.3e-14 84.3 212 28.3
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 2.3e-14 83.6 151 30.5
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 3.0e-14 83.2 191 27.7
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 3.0e-14 83.2 172 32.0
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 3.0e-14 83.2 164 30.5
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 3.0e-14 83.2 164 30.5
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 3.9e-14 82.8 164 31.1
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 3.9e-14 82.8 231 28.6
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 5.0e-14 82.4 164 30.5
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 5.0e-14 82.4 163 31.9
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 5.0e-14 82.4 163 31.9
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 6.6e-14 82.0 203 26.1
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 8.6e-14 81.6 173 26.6
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 8.6e-14 81.6 156 28.2
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 8.6e-14 81.6 198 28.8
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 1.1e-13 81.3 145 31.7
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 1.5e-13 80.9 133 31.6
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 1.5e-13 80.9 133 31.6
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.5e-13 80.9 170 29.4
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 1.9e-13 80.5 133 31.6
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 1.9e-13 80.5 133 31.6
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 1.9e-13 80.5 164 29.9
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 2.5e-13 80.1 151 31.1
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 3.3e-13 79.7 134 33.6
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 5.6e-13 79.0 161 30.4
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 9.5e-13 78.2 148 29.1
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 1.6e-12 77.4 133 30.8
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.6e-12 77.4 176 29.0
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 1.6e-12 77.4 134 33.6
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.4e-11 74.3 160 26.9
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 1.8e-11 73.9 156 26.9
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 2.3e-11 73.6 140 32.1
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 4.0e-11 72.8 161 28.6
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 3.4e-10 69.7 149 29.5
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 1.3e-09 67.8 151 26.5
MD15G1063400 Malus domestica HOM05D008077 ORTHO05D010221 3.7e-09 66.2 81 44.4
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.4e-08 63.5 140 28.6
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 7.0e-08 62.0 98 33.7
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 7.0e-08 62.0 139 28.8
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 9.2e-08 61.6 105 35.2
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 7.8e-07 58.5 110 30.0
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 2.3e-06 57.0 109 29.4


User provided reference genes

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