Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 6.3e-196 687.2 334 100.0
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 2.8e-175 618.6 321 93.5
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 7.8e-170 600.5 322 89.8
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 4.3e-168 594.7 322 89.1
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 1.8e-166 589.3 322 88.5
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 2.4e-166 589.0 322 87.0
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 2.4e-166 589.0 322 88.5
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 3.1e-166 588.6 322 86.6
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 3.4e-165 585.1 322 88.2
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 4.4e-165 584.7 322 86.6
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 7.6e-165 583.9 323 87.0
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.7e-164 582.8 322 88.2
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.4e-163 578.9 322 87.6
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.4e-163 578.9 322 84.8
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.2e-163 578.6 322 87.6
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 7.1e-163 577.4 322 85.7
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 7.1e-163 577.4 322 87.0
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 2.1e-162 575.9 322 85.4
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 2.1e-162 575.9 322 87.3
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 4.6e-162 574.7 322 85.4
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 7.8e-162 573.9 322 87.3
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.7e-161 572.8 322 86.6
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 3.0e-161 572.0 323 84.5
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 3.9e-161 571.6 322 84.8
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 8.7e-161 570.5 322 85.1
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.5e-160 569.7 322 87.0
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 7.3e-160 567.4 322 84.5
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 9.6e-160 567.0 322 85.4
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 1.3e-159 566.6 323 83.9
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 2.1e-159 565.8 322 84.5
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.8e-159 565.5 322 82.6
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 3.6e-159 565.1 323 83.9
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 6.2e-159 564.3 323 83.6
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.1e-158 563.5 323 83.9
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 2.4e-158 562.4 322 81.7
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 3.1e-158 562.0 322 83.9
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 4.0e-158 561.6 322 82.9
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 4.0e-158 561.6 322 83.2
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 5.3e-158 561.2 322 82.3
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 1.5e-157 559.7 322 82.6
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 2.0e-157 559.3 322 82.9
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.6e-157 558.9 323 83.3
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 3.4e-157 558.5 322 83.2
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 4.4e-157 558.1 322 81.7
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 1.3e-156 556.6 322 83.2
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 1.7e-156 556.2 322 81.7
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 2.2e-156 555.8 322 81.1
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 2.2e-156 555.8 323 82.0
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 2.9e-156 555.4 322 79.8
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 3.8e-156 555.1 322 80.4
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 4.9e-156 554.7 322 82.0
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 4.9e-156 554.7 323 81.7
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.4e-155 553.1 323 81.4
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 2.4e-155 552.4 322 82.6
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 2.4e-155 552.4 323 81.7
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.2e-154 550.1 322 81.1
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 1.6e-154 549.7 323 82.0
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 4.6e-154 548.1 323 81.7
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 6.0e-154 547.7 322 79.2
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 6.0e-154 547.7 322 79.2
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 6.0e-154 547.7 326 80.4
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 8.7e-153 543.9 322 81.7
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 1.1e-152 543.5 322 79.8
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 1.1e-152 543.5 322 78.6
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.9e-152 542.7 322 80.7
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.3e-152 542.0 322 80.1
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 4.3e-152 541.6 323 80.5
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 4.3e-152 541.6 322 79.8
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 4.3e-152 541.6 322 80.7
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 4.3e-152 541.6 322 80.4
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 7.3e-152 540.8 322 79.5
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 9.6e-152 540.4 322 80.1
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 1.6e-151 539.7 323 80.2
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 1.6e-151 539.7 322 78.6
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 2.1e-151 539.3 322 80.1
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 8.1e-151 537.3 323 78.6
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 1.4e-150 536.6 322 82.3
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 4.0e-150 535.0 322 78.9
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 6.9e-150 534.3 322 78.9
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 9.0e-150 533.9 322 78.6
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 9.0e-150 533.9 322 79.2
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 1.2e-149 533.5 322 79.5
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 1.2e-149 533.5 322 80.1
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 2.0e-149 532.7 323 79.3
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 3.4e-149 531.9 322 78.6
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 5.8e-149 531.2 322 79.2
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 7.6e-149 530.8 322 79.2
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.7e-148 529.6 340 76.8
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 2.2e-148 529.3 323 78.0
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 3.8e-148 528.5 322 78.0
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 6.4e-148 527.7 322 78.0
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 1.1e-147 526.9 322 78.0
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.9e-147 526.2 326 77.6
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 7.1e-147 524.2 323 79.3
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.2e-146 523.5 323 78.0
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.6e-146 523.1 326 77.3
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 3.5e-146 521.9 323 77.1
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 6.0e-146 521.2 322 75.8
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 1.3e-145 520.0 322 76.7
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 5.1e-145 518.1 349 73.4
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.5e-144 515.8 323 77.4
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 5.6e-144 514.6 322 76.1
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 1.3e-143 513.5 322 75.5
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.4e-142 510.0 322 76.1
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 3.1e-142 508.8 322 76.7
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 4.0e-142 508.4 335 74.3
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 4.0e-142 508.4 322 76.7
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 4.0e-142 508.4 322 75.8
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 4.0e-142 508.4 322 75.8
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 4.0e-142 508.4 322 75.8
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 9.0e-142 507.3 322 75.5
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 2.0e-141 506.1 322 76.1
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.7e-140 503.1 306 79.1
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 5.7e-136 488.0 322 72.7
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 7.4e-136 487.6 323 73.1
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 2.1e-135 486.1 323 72.4
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.5e-133 479.9 323 69.0
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.0e-133 479.6 349 70.2
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 3.4e-133 478.8 328 71.0
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 1.0e-132 477.2 340 68.8
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 1.7e-132 476.5 328 71.0
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 9.3e-131 470.7 326 73.6
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 3.0e-129 465.7 322 69.3
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 4.1e-126 455.3 331 64.4
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 4.2e-123 445.3 322 69.3
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 9.7e-120 434.1 338 63.9
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.9e-116 422.5 323 61.3
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.9e-116 422.5 323 61.3
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 9.4e-115 417.5 239 85.4
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.1e-110 402.1 326 62.6
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 5.3e-102 375.2 322 57.1
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 7.2e-91 338.2 240 70.8
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.2e-90 337.4 223 72.6
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 5.9e-77 292.0 170 80.6
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 5.6e-75 285.4 169 84.0
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.4e-70 270.8 177 75.1
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 3.9e-68 262.7 169 75.7
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 5.0e-68 262.3 124 95.2
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 2.5e-67 260.0 155 76.8
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 1.6e-61 240.7 155 71.0
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 1.1e-59 234.6 199 59.3
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.2e-58 231.1 138 81.9
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.8e-58 229.9 137 81.8
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.8e-57 227.3 138 81.2
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.3e-57 226.9 138 81.2
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 1.3e-55 221.1 140 77.1
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 7.8e-53 211.8 128 81.2
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 6.4e-47 192.2 102 83.3
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 6.0e-45 185.7 98 91.8
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 7.8e-45 185.3 158 62.7
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 7.3e-43 178.7 105 77.1
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 9.6e-43 178.3 98 88.8
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 8.4e-23 112.1 63 79.4
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 1.1e-22 111.7 63 79.4
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 5.5e-22 109.4 71 69.0
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 2.7e-21 107.1 63 76.2
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 6.0e-21 105.9 63 79.4
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.8e-20 104.4 63 77.8
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 7.4e-19 99.0 57 71.9
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 4.2e-14 83.2 54 70.4
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 9.3e-14 82.0 279 26.2
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 1.0e-12 78.6 54 61.1
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 1.8e-12 77.8 70 61.4
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.3e-10 71.6 285 25.6
FvH4_5g33600 Fragaria vesca HOM05D001656 ORTHO05D005043 8.5e-07 58.9 49 59.2
FAN18G3130 Fragaria x ananassa HOM05D001656 ORTHO05D005043 8.5e-07 58.9 49 59.2


User provided reference genes

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