Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 7.3e-74 280.4 137 100.0
Dinv10667 Davidia involucrata HOM05D003031 ORTHO05D003371 1.0e-19 100.5 52 88.5
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 2.6e-18 95.9 79 62.0
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 4.4e-18 95.1 68 70.6
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 3.5e-15 85.5 70 60.0
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 7.7e-15 84.3 72 63.9
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 1.3e-14 83.6 82 61.0
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 6.5e-14 81.3 67 61.2
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 2.5e-13 79.3 66 60.6
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 4.2e-13 78.6 70 57.1
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 1.6e-12 76.6 83 56.6
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 2.1e-12 76.3 88 48.9
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 2.7e-12 75.9 66 59.1
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 2.7e-12 75.9 66 59.1
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 4.7e-12 75.1 65 64.6
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 4.7e-12 75.1 58 62.1
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 4.7e-12 75.1 77 53.2
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 6.1e-12 74.7 66 59.1
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 6.1e-12 74.7 70 60.0
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 8.0e-12 74.3 70 58.6
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 1.0e-11 73.9 78 60.3
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 4.0e-11 72.0 70 54.3
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 6.8e-11 71.2 74 52.7
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 8.8e-11 70.9 59 61.0
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 8.8e-11 70.9 70 54.3
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.2e-10 70.5 67 53.7
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 1.5e-10 70.1 39 79.5
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.5e-10 70.1 66 57.6
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 1.5e-10 70.1 71 54.9
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 1.5e-10 70.1 63 58.7
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 2.0e-10 69.7 65 53.8
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 2.0e-10 69.7 65 53.8
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 4.4e-10 68.6 65 55.4
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 5.7e-10 68.2 67 59.7
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 9.8e-10 67.4 45 66.7
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 1.7e-09 66.6 70 52.9
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 2.2e-09 66.2 52 65.4
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 2.2e-09 66.2 65 56.9
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 2.2e-09 66.2 70 52.9
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 3.7e-09 65.5 66 54.5
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 6.3e-09 64.7 83 49.4
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 8.3e-09 64.3 83 42.2
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 8.3e-09 64.3 68 51.5
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 1.1e-08 63.9 66 48.5
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 1.8e-08 63.2 67 50.7
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 2.4e-08 62.8 57 52.6
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 3.1e-08 62.4 69 52.2
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 4.1e-08 62.0 68 51.5
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 4.1e-08 62.0 60 56.7
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 4.1e-08 62.0 60 56.7
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 9.1e-08 60.8 73 43.8
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 2.0e-07 59.7 54 55.6
CSS0024103 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 4.5e-07 58.5 70 57.1
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 4.5e-07 58.5 66 48.5
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 5.9e-07 58.2 70 50.0
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 7.7e-07 57.8 66 47.0
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 7.7e-07 57.8 66 54.5
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 1.7e-06 56.6 70 42.9
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 1.7e-06 56.6 72 44.4
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 5.0e-06 55.1 70 42.9
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 6.6e-06 54.7 64 40.6
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 8.6e-06 54.3 42 64.3


User provided reference genes

Program Settings