Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44854 Davidia involucrata HOM05D008012 ORTHO05D010154 3.1e-165 585.1 304 100.0
Dinv42620 Davidia involucrata HOM05D008012 ORTHO05D010154 1.5e-79 300.4 448 46.0
CSS0008352 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 9.0e-64 248.1 320 50.9
TAR628G1418 Trochodendron aralioides HOM05D008012 ORTHO05D010154 1.2e-55 221.1 369 40.4
CiPaw.07G166200 Carya illinoinensis HOM05D008012 ORTHO05D010154 4.9e-54 215.7 315 44.8
Cfa013683 Carpinus fangiana HOM05D008012 ORTHO05D010154 1.9e-50 203.8 395 39.5
Hma1.2p1_0125F.1_g058940 Hydrangea macrophylla HOM05D008012 ORTHO05D010154 2.4e-48 196.8 298 44.0
COL.COLO4_35233 Corchorus olitorius HOM05D008012 ORTHO05D010154 2.1e-41 173.7 293 40.3
GSVIVG01009167001 Vitis vinifera HOM05D008012 ORTHO05D010154 2.9e-38 163.3 150 60.0
Ciclev10002397m.g Citrus clementina HOM05D008012 ORTHO05D010154 5.0e-38 162.5 291 38.1
Prupe.1G530900 Prunus persica HOM05D008012 ORTHO05D010154 4.6e-36 156.0 157 52.9
PGR031G3518 Punica granatum HOM05D052328 ORTHO05D010154 2.3e-35 153.7 357 32.5
Rhsim06G0072100 Rhododendron simsii HOM05D008012 ORTHO05D010154 2.3e-35 153.7 135 59.3
vmacro21334 Vaccinium macrocarpon HOM05D008012 ORTHO05D010154 1.9e-34 150.6 134 62.7
Duzib093G0747 Durio zibethinus HOM05D008012 ORTHO05D010154 5.7e-34 149.1 338 34.0
RcHm_v2.0_Chr7g0236831 Rosa chinensis HOM05D008012 ORTHO05D010154 3.7e-33 146.4 280 37.9
Nn5g29899 Nelumbo nucifera HOM05D008012 ORTHO05D010154 6.3e-33 145.6 297 38.4
Gohir.D05G222500 Gossypium hirsutum HOM05D008012 ORTHO05D010154 8.2e-33 145.2 288 35.8
CANSAT25G2577 Cannabis sativa HOM05D008012 ORTHO05D010154 1.4e-32 144.4 298 36.6
Cpa.g.sc21.9 Carica papaya HOM05D008012 ORTHO05D010154 3.1e-32 143.3 286 38.5
Gorai.009G229900 Gossypium raimondii HOM05D008012 ORTHO05D010154 4.1e-32 142.9 293 34.8
Manes.18G059880 Manihot esculenta HOM05D008012 ORTHO05D010154 5.3e-32 142.5 291 36.4
MBI02_g32605_MAGBIO Magnolia biondii HOM05D008012 ORTHO05D010154 9.0e-32 141.7 287 38.7
Atru.chr13.1021 Acer truncatum HOM05D008012 ORTHO05D010154 3.4e-31 139.8 296 34.8
Gohir.A05G219900 Gossypium hirsutum HOM05D008012 ORTHO05D010154 1.1e-29 134.8 288 33.0
TWI56G1079 Tripterygium wilfordii HOM05D008012 ORTHO05D010154 1.1e-29 134.8 262 36.6
Eucgr.F02139 Eucalyptus grandis HOM05D008012 ORTHO05D010154 2.5e-29 133.7 160 46.9
QL09p017632 Quercus lobata HOM05D008012 ORTHO05D010154 4.2e-29 132.9 283 35.0
Potri.005G156500 Populus trichocarpa HOM05D008012 ORTHO05D010154 5.5e-29 132.5 331 33.2
Thecc.08G070000 Theobroma cacao HOM05D008012 ORTHO05D010154 2.1e-28 130.6 203 45.3
Sabra05G0120100 Salix brachista HOM05D008012 ORTHO05D010154 3.9e-27 126.3 331 30.8
Lalb_Chr11g0065041 Lupinus albus HOM05D008012 ORTHO05D010154 6.7e-27 125.6 279 33.7
Lj1g0025426 Lotus japonicus HOM05D008012 ORTHO05D010154 5.7e-26 122.5 164 43.9
Phvul.009G144400 Phaseolus vulgaris HOM05D008012 ORTHO05D010154 4.8e-25 119.4 272 32.0
Aqoxy5G01307 Aquilegia oxysepala HOM05D008012 ORTHO05D010154 1.2e-23 114.8 165 39.4
Hund16860 Selenicereus undatus HOM05D008012 ORTHO05D010154 1.5e-23 114.4 284 31.3
Lalb_Chr23g0270051 Lupinus albus HOM05D008012 ORTHO05D010154 5.9e-23 112.5 264 31.8
Glyma.04G091500 Glycine max HOM05D008012 ORTHO05D010154 7.7e-23 112.1 295 29.2
PSO017G0519 Papaver somniferum HOM05D008012 ORTHO05D010154 7.7e-23 112.1 328 30.2
Sc23g0000670 Simmondsia chinensis HOM05D008012 ORTHO05D010154 7.7e-23 112.1 182 41.2
Aqoxy6G01439 Aquilegia oxysepala HOM05D008012 ORTHO05D010154 1.0e-22 111.7 132 43.9
EL10Ac1g01062 Beta vulgaris HOM05D008012 ORTHO05D010154 8.5e-22 108.6 295 28.1
Psat5g046360 Pisum sativum HOM05D008012 ORTHO05D010154 1.1e-21 108.2 275 30.9
Actinidia10381 Actinidia chinensis HOM05D000160 ORTHO05D001344 3.2e-21 106.7 79 64.6
CDE04G1170 Ceratophyllum demersum HOM05D008012 ORTHO05D010154 3.2e-21 106.7 267 31.5
AUR62019041 Chenopodium quinoa HOM05D008012 ORTHO05D010154 4.2e-21 106.3 166 37.3
TPR.G26063 Trifolium pratense HOM05D008012 ORTHO05D010154 5.5e-21 105.9 99 47.5
FAN04G0544 Fragaria x ananassa HOM05D008012 ORTHO05D010154 7.2e-21 105.5 148 43.9
Glyma.06G093300 Glycine max HOM05D008012 ORTHO05D010154 1.2e-20 104.8 285 30.5
FAN18G1410 Fragaria x ananassa HOM05D008012 ORTHO05D010154 2.1e-20 104.0 145 44.8
FvH4_5g35450 Fragaria vesca HOM05D008012 ORTHO05D010154 2.7e-20 103.6 148 43.9
FAN08G2109 Fragaria x ananassa HOM05D008012 ORTHO05D010154 2.7e-20 103.6 148 43.9
ECA232G0711 Erigeron canadensis HOM05D008012 ORTHO05D010154 4.7e-20 102.8 155 38.7
HanXRQChr12g0378051 Helianthus annuus HOM05D008012 ORTHO05D010154 7.9e-20 102.1 140 42.9
Lsat_1_v5_gn_9_75360 Lactuca sativa HOM05D008012 ORTHO05D010154 1.0e-19 101.7 271 31.7
CAN.G1215.11 Capsicum annuum HOM05D008012 ORTHO05D010154 1.8e-19 100.9 132 43.9
Ca_15998_v3 Cicer arietinum L. HOM05D008012 ORTHO05D010154 2.3e-19 100.5 94 48.9
VMungo1309G2208 Vigna mungo HOM05D008012 ORTHO05D010154 8.8e-19 98.6 106 47.2
CSS0015058 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 3.3e-18 96.7 73 68.5
Medtr3g100460 Medicago truncatula HOM05D008012 ORTHO05D010154 9.7e-18 95.1 102 44.1
arahy.Tifrunner.gnm1.ann1.S7389H Arachis hypogaea HOM05D008012 ORTHO05D010154 2.2e-17 94.0 129 44.2
HanXRQChr12g0378041 Helianthus annuus HOM05D008012 ORTHO05D010154 8.2e-17 92.0 109 46.8
ATR0665G245 Amborella trichopoda HOM05D008012 ORTHO05D010154 2.6e-15 87.0 131 40.5
Zm00001eb038310 Zea mays HOM05D008012 ORTHO05D010154 8.5e-14 82.0 127 37.8
Sopen07g015000 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-10 70.9 86 48.8
CSS0023045 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 4.4e-10 69.7 82 50.0
MD08G1196600 Malus domestica HOM05D008012 ORTHO05D010154 5.7e-10 69.3 201 33.3
SEGI_09514 Sequoiadendron giganteum HOM05D008012 ORTHO05D010154 2.2e-09 67.4 100 37.0
HPP92_005977 Vanilla planifolia HOM05D061362 ORTHO05D010154 3.7e-09 66.6 87 41.4
Pp3c2_36970 Physcomitrium patens HOM05D008196 ORTHO05D010261 3.1e-08 63.5 105 30.5
Pp3c2_36980 Physcomitrium patens HOM05D008196 ORTHO05D010261 3.1e-08 63.5 105 30.5
COL.COLO4_22690 Corchorus olitorius HOM05D008012 ORTHO05D010154 4.5e-07 59.7 66 50.0
Os08g0477800 Oryza sativa ssp. japonica HOM05D008012 ORTHO05D010154 4.5e-07 59.7 269 27.5
Pp3c1_4500 Physcomitrium patens HOM05D008196 ORTHO05D010261 2.2e-06 57.4 172 26.2
arahy.Tifrunner.gnm1.ann1.XWH5X4 Arachis hypogaea HOM05D008012 ORTHO05D010154 6.5e-06 55.8 121 34.7
Mapoly0028s0074 Marchantia polymorpha HOM05D008196 ORTHO05D010261 8.5e-06 55.5 261 19.5


User provided reference genes

Program Settings