Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 8.9e-47 189.9 93 100.0
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 4.9e-45 184.1 93 95.7
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 6.3e-45 183.7 93 95.7
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 9.2e-44 179.9 93 93.5
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 4.6e-43 177.6 93 93.5
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 5.9e-43 177.2 93 91.4
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.0e-42 176.4 93 91.4
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.0e-42 176.4 93 91.4
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.0e-42 176.4 93 91.4
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.0e-42 176.4 91 93.4
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 1.3e-42 176.0 92 92.4
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 1.7e-42 175.6 93 91.4
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 2.9e-42 174.9 93 88.2
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 3.9e-42 174.5 93 88.2
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 5.0e-42 174.1 93 90.3
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 6.6e-42 173.7 93 90.3
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 8.6e-42 173.3 92 89.1
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 1.1e-41 172.9 92 89.1
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.1e-41 172.9 93 89.2
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 1.5e-41 172.6 93 89.2
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 1.5e-41 172.6 93 88.2
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 1.9e-41 172.2 93 88.2
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 2.5e-41 171.8 92 89.1
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 4.3e-41 171.0 93 88.2
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 4.3e-41 171.0 93 87.1
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 7.3e-41 170.2 93 88.2
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 1.2e-40 169.5 93 87.1
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 1.2e-40 169.5 92 87.0
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 3.6e-40 167.9 93 87.1
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 3.6e-40 167.9 93 87.1
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 1.0e-39 166.4 93 84.9
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 1.0e-39 166.4 94 87.2
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.0e-39 166.4 93 84.9
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 1.4e-39 166.0 93 84.9
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 1.4e-39 166.0 93 87.1
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.8e-39 165.6 93 84.9
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 2.3e-39 165.2 93 84.9
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 2.3e-39 165.2 93 84.9
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.3e-39 165.2 93 83.9
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.3e-39 165.2 93 83.9
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 2.3e-39 165.2 93 84.9
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 2.3e-39 165.2 92 85.9
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 5.2e-39 164.1 93 84.9
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 6.8e-39 163.7 93 82.8
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 6.8e-39 163.7 93 82.8
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 6.8e-39 163.7 93 83.9
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 82.8
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 82.8
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 82.8
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 82.8
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.2e-38 162.9 91 83.5
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.2e-38 162.9 93 83.9
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 82.8
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 81.7
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 84.9
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 2.6e-38 161.8 92 85.9
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 2.6e-38 161.8 93 84.9
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.4e-38 161.4 89 85.4
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 4.4e-38 161.0 92 83.7
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 4.4e-38 161.0 93 87.1
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 5.8e-38 160.6 93 83.9
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 5.8e-38 160.6 93 82.8
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 7.5e-38 160.2 91 83.5
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 9.8e-38 159.8 92 82.6
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.3e-37 159.5 93 82.8
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 1.7e-37 159.1 93 81.7
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.2e-37 158.7 93 79.6
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 2.9e-37 158.3 86 87.2
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 2.9e-37 158.3 95 82.1
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 2.9e-37 158.3 95 82.1
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 2.9e-37 158.3 93 80.6
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 6.4e-37 157.1 93 81.7
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 8.3e-37 156.8 88 84.1
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.4e-36 156.0 86 86.0
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 1.4e-36 156.0 93 78.5
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.4e-36 156.0 93 79.6
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 1.4e-36 156.0 93 79.6
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 1.4e-36 156.0 93 79.6
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.9e-36 155.6 85 87.1
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 1.9e-36 155.6 88 87.5
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 2.4e-36 155.2 93 80.6
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 2.4e-36 155.2 91 82.4
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 2.4e-36 155.2 91 82.4
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.4e-36 155.2 88 83.0
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 9.2e-36 153.3 93 78.5
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.6e-35 152.5 86 83.7
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 7.8e-35 150.2 92 78.3
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 1.0e-34 149.8 91 80.2
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.3e-34 149.4 93 74.2
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 1.7e-34 149.1 95 76.8
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 1.7e-34 149.1 95 76.8
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 3.0e-34 148.3 94 76.6
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 5.0e-34 147.5 86 81.4
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 1.1e-33 146.4 88 79.5
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 1.1e-33 146.4 94 74.5
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 1.5e-33 146.0 93 74.2
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.9e-33 145.6 118 64.4
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 1.9e-33 145.6 90 77.8
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.5e-33 145.2 90 73.3
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.5e-33 145.2 90 73.3
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 2.5e-33 145.2 94 78.7
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 74.5
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 7.3e-33 143.7 89 76.4
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 7.3e-33 143.7 88 75.0
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 7.3e-33 143.7 87 77.0
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 9.5e-33 143.3 88 77.3
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.2e-32 142.9 90 72.2
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 1.2e-32 142.9 94 72.3
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 72.3
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 72.3
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 72.3
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 72.3
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 72.3
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 2.1e-32 142.1 92 73.9
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 2.8e-32 141.7 93 76.3
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 2.8e-32 141.7 93 77.4
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 4.7e-32 141.0 89 75.3
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 4.7e-32 141.0 89 75.3
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 6.2e-32 140.6 89 75.3
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 6.2e-32 140.6 89 75.3
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 6.2e-32 140.6 90 72.2
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 6.2e-32 140.6 74 87.8
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 8.1e-32 140.2 89 75.3
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 8.1e-32 140.2 94 72.3
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 3.1e-31 138.3 82 75.6
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 5.2e-31 137.5 70 91.4
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 1.2e-30 136.3 70 91.4
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-30 136.3 93 72.0
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-30 136.3 93 72.0
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.5e-30 136.0 71 91.5
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.5e-30 136.0 78 80.8
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 2.6e-30 135.2 70 90.0
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 9.8e-30 133.3 116 59.5
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.9e-29 131.7 71 87.3
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.9e-29 131.7 90 73.3
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 1.1e-28 129.8 76 78.9
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 1.4e-28 129.4 70 85.7
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 4.1e-28 127.9 93 68.8
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 9.2e-28 126.7 82 72.0
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 1.2e-27 126.3 71 84.5
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.1e-27 125.6 87 71.3
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 2.7e-27 125.2 71 80.3
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 6.0e-27 124.0 86 73.3
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 3.9e-26 121.3 71 81.7
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.6e-24 115.9 91 68.1
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 3.6e-24 114.8 86 69.8
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 1.8e-23 112.5 70 78.6
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 4.0e-23 111.3 67 74.6
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 3.7e-21 104.8 82 63.4
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.7e-21 104.8 98 56.1
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 4.9e-21 104.4 50 92.0
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 2.4e-20 102.1 90 56.7
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 1.0e-18 96.7 90 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 1.6e-16 89.4 87 51.7
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 8.9e-15 83.6 49 81.6
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.2 58 67.2
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.6e-14 82.0 51 72.5
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.6e-14 82.0 51 72.5
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.6e-14 82.0 51 72.5
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.6e-14 82.0 51 72.5
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 2.2e-13 79.0 44 84.1
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 8.4e-13 77.0 48 72.9
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.4e-12 76.3 49 71.4
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.9e-12 75.9 47 70.2
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 7.1e-12 73.9 54 66.7
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 4.6e-11 71.2 56 58.9


User provided reference genes

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