Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 3.3e-101 371.7 188 100.0
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 1.6e-42 176.8 161 68.9
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 1.1e-22 110.9 146 52.1
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 2.6e-21 106.3 147 50.3
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 1.3e-20 104.0 146 50.0
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 3.0e-17 92.8 145 46.2
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 1.1e-16 90.9 165 41.2
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 9.6e-16 87.8 148 45.3
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.6e-15 87.0 133 39.8
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.8e-15 86.3 135 43.7
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 6.2e-15 85.1 157 44.6
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 1.1e-14 84.3 157 43.9
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.1e-14 82.8 130 44.6
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 6.9e-14 81.6 147 44.2
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 6.9e-14 81.6 160 41.9
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 2.0e-13 80.1 155 41.3
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 3.4e-13 79.3 179 38.0
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 3.4e-13 79.3 148 42.6
SalBow6G5116 Salvia bowleyana HOM05D002974 ORTHO05D002992 7.6e-13 78.2 118 47.5
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 1.7e-12 77.0 146 39.7
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 2.2e-12 76.6 130 46.2
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 4.9e-12 75.5 153 39.2
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 8.4e-12 74.7 159 41.5
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 1.4e-11 73.9 144 41.0
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 2.4e-11 73.2 130 45.4
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 2.4e-11 73.2 159 38.4
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 4.2e-11 72.4 131 38.9
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 5.4e-11 72.0 121 43.0
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 7.1e-11 71.6 157 37.6
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 7.1e-11 71.6 130 43.1
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 9.3e-11 71.2 114 46.5
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 1.2e-10 70.9 113 45.1
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.1e-10 70.1 141 43.3
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.7e-10 69.7 119 45.4
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 3.5e-10 69.3 162 37.7
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.5e-10 69.3 138 37.7
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 4.6e-10 68.9 114 45.6
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.6e-10 68.9 116 44.8
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.6e-10 68.9 114 45.6
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 4.6e-10 68.9 136 41.9
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 6.0e-10 68.6 130 41.5
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 7.9e-10 68.2 136 42.6
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.9e-10 68.2 116 44.8
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 3.0e-09 66.2 147 38.8
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.0e-09 66.2 116 44.0
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.0e-09 66.2 134 37.3
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 3.0e-09 66.2 146 40.4
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.9e-09 65.9 136 37.5
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 3.9e-09 65.9 64 59.4
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 3.9e-09 65.9 125 40.0
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 3.9e-09 65.9 182 34.1
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 3.9e-09 65.9 133 42.1
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 3.9e-09 65.9 133 42.1
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 5.1e-09 65.5 139 37.4
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 8.7e-09 64.7 147 38.1
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 8.7e-09 64.7 59 61.0
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 8.7e-09 64.7 142 39.4
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 8.7e-09 64.7 132 42.4
DCAR_025326 Daucus carota HOM05D002974 ORTHO05D002992 1.1e-08 64.3 38 84.2
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 1.5e-08 63.9 67 58.2
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 1.5e-08 63.9 141 37.6
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.9e-08 63.5 147 36.1
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.9e-08 63.5 150 35.3
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 2.5e-08 63.2 145 35.9
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.5e-08 63.2 138 40.6
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 2.5e-08 63.2 57 57.9
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 2.5e-08 63.2 57 57.9
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 2.5e-08 63.2 148 35.1
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 3.3e-08 62.8 140 40.0
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.3e-08 62.8 104 45.2
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 4.3e-08 62.4 140 38.6
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 4.3e-08 62.4 171 36.3
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 4.3e-08 62.4 171 36.3
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 5.6e-08 62.0 49 69.4
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 5.6e-08 62.0 135 40.7
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 5.6e-08 62.0 66 53.0
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 5.6e-08 62.0 149 36.9
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 7.4e-08 61.6 134 36.6
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 7.4e-08 61.6 69 50.7
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 9.6e-08 61.2 124 39.5
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.3e-07 60.8 127 37.8
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.3e-07 60.8 137 39.4
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.3e-07 60.8 71 46.5
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 1.6e-07 60.5 57 56.1
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 2.1e-07 60.1 62 58.1
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 2.1e-07 60.1 138 34.8
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 2.8e-07 59.7 58 62.1
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 2.8e-07 59.7 136 36.8
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 4.8e-07 58.9 154 35.7
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.8e-07 58.9 129 37.2
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 4.8e-07 58.9 150 34.7
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 4.8e-07 58.9 53 62.3
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.8e-07 58.9 134 37.3
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 4.8e-07 58.9 77 46.8
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.8e-07 58.9 51 62.7
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 6.2e-07 58.5 139 38.8
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 6.2e-07 58.5 132 37.9
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 6.2e-07 58.5 57 56.1
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 8.1e-07 58.2 75 46.7
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 8.1e-07 58.2 67 50.7
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 8.1e-07 58.2 66 51.5
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 1.1e-06 57.8 46 63.0
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 1.4e-06 57.4 47 61.7
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 1.4e-06 57.4 46 63.0
Migut.B00886 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.4e-06 57.4 115 38.3
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.4e-06 57.4 144 34.0
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.4e-06 57.4 193 32.6
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 1.8e-06 57.0 142 34.5
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.8e-06 57.0 137 38.7
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 1.8e-06 57.0 152 36.8
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.8e-06 57.0 54 59.3
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.4e-06 56.6 126 37.3
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 2.4e-06 56.6 47 61.7
Phvul.011G203450 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 2.4e-06 56.6 45 62.2
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 2.4e-06 56.6 68 51.5
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 3.1e-06 56.2 131 33.6
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 3.1e-06 56.2 46 69.6
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 3.1e-06 56.2 52 61.5
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 3.1e-06 56.2 45 64.4
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 4.0e-06 55.8 54 59.3
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 4.0e-06 55.8 144 34.0
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 4.0e-06 55.8 54 57.4
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 5.3e-06 55.5 71 47.9
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 5.3e-06 55.5 64 46.9
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 5.3e-06 55.5 45 64.4
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.3e-06 55.5 151 33.8
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 6.9e-06 55.1 154 33.1
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 6.9e-06 55.1 77 42.9
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 6.9e-06 55.1 122 36.1
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 6.9e-06 55.1 47 59.6
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 9.0e-06 54.7 60 50.0
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 9.0e-06 54.7 87 42.5


User provided reference genes

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