Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 2.7e-197 691.8 352 100.0
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 1.2e-125 453.8 331 69.8
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 1.7e-119 433.3 368 62.8
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.1e-118 430.6 361 64.0
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 9.9e-115 417.5 336 67.3
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 2.9e-114 416.0 357 61.3
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 6.4e-114 414.8 358 62.6
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 3.2e-113 412.5 365 62.5
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 2.7e-112 409.5 363 60.6
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 1.1e-110 404.1 358 61.5
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 9.6e-110 401.0 358 61.5
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 5.3e-108 395.2 358 58.7
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 1.5e-107 393.7 361 59.0
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 1.7e-106 390.2 354 59.9
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 2.2e-106 389.8 355 59.4
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 1.1e-105 387.5 352 59.4
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 9.3e-105 384.4 360 57.5
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 1.6e-104 383.6 360 57.5
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 2.7e-104 382.9 347 61.1
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 4.6e-104 382.1 341 60.1
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 2.3e-103 379.8 362 59.1
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 3.0e-103 379.4 355 58.3
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 3.9e-103 379.0 350 58.6
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 5.1e-103 378.6 333 60.4
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 1.5e-102 377.1 361 57.1
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 2.5e-102 376.3 347 59.9
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 9.6e-102 374.4 360 57.8
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 2.8e-101 372.9 343 60.1
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 4.8e-101 372.1 361 56.8
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 8.1e-101 371.3 341 58.4
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 5.3e-100 368.6 341 58.9
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 2.9e-98 362.8 361 57.9
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 4.9e-98 362.1 342 58.5
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 4.2e-97 359.0 356 58.1
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 6.0e-96 355.1 350 57.4
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 1.8e-95 353.6 367 54.2
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.0e-95 352.8 364 56.3
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.0e-95 352.8 364 56.3
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.0e-95 352.8 364 56.3
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 5.1e-95 352.1 367 53.7
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 5.1e-95 352.1 339 58.1
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 1.1e-94 350.9 357 56.9
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 4.8e-93 345.5 350 55.1
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 4.8e-93 345.5 367 53.7
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 1.4e-92 344.0 361 53.7
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.2e-91 340.9 360 56.1
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 1.2e-91 340.9 350 54.0
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 5.8e-91 338.6 345 57.1
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 3.5e-88 329.3 355 53.0
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 1.5e-86 323.9 353 50.1
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 2.5e-86 323.2 340 52.4
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 4.3e-86 322.4 367 49.0
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 4.3e-86 322.4 334 52.4
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 4.8e-85 318.9 345 51.3
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 6.3e-85 318.5 343 51.3
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 2.4e-84 316.6 352 51.7
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 5.3e-84 315.5 358 48.0
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 6.9e-84 315.1 328 52.4
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 6.9e-84 315.1 359 49.0
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 1.2e-83 314.3 361 50.4
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 1.3e-82 310.8 333 52.6
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 3.8e-82 309.3 349 49.3
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 8.4e-82 308.1 359 46.8
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 9.3e-81 304.7 348 49.7
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 2.7e-80 303.1 333 50.8
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 1.0e-79 301.2 343 50.4
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 3.9e-79 299.3 349 49.0
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 6.7e-79 298.5 359 46.2
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 1.1e-78 297.7 328 49.4
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.1e-76 291.2 354 47.7
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 1.8e-76 290.4 294 53.7
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 3.4e-75 286.2 323 47.7
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 1.7e-74 283.9 330 50.6
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 1.7e-74 283.9 352 46.6
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 2.2e-74 283.5 363 47.9
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 6.5e-74 282.0 344 47.7
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 6.5e-74 282.0 344 47.7
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 6.5e-74 282.0 344 47.7
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 6.5e-74 282.0 306 50.0
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 2.1e-72 276.9 338 46.4
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 4.6e-72 275.8 348 45.1
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 3.0e-71 273.1 260 60.0
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 3.9e-71 272.7 336 47.3
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 5.1e-71 272.3 337 47.8
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 9.7e-70 268.1 349 44.7
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 9.7e-70 268.1 359 44.0
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 3.7e-69 266.2 310 50.3
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 3.7e-69 266.2 347 45.5
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 3.4e-67 259.6 271 51.7
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 5.9e-67 258.8 368 45.4
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 1.9e-65 253.8 356 42.1
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 2.5e-65 253.4 349 45.3
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 9.4e-65 251.5 303 49.2
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 4.7e-64 249.2 325 46.5
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 7.9e-64 248.4 317 45.7
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 2.3e-63 246.9 374 44.1
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 1.5e-62 244.2 206 57.3
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 3.3e-62 243.0 248 52.8
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 1.8e-60 237.3 352 41.2
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 1.3e-58 231.1 334 44.3
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 4.1e-52 209.5 355 39.2
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 3.2e-49 199.9 319 36.7
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 9.4e-49 198.4 265 47.5
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 9.8e-46 188.3 327 37.9
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 4.5e-43 179.5 360 37.2
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.7e-42 177.6 140 62.9
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 3.2e-41 173.3 322 35.1
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 4.7e-40 169.5 330 37.6
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 8.8e-39 165.2 130 61.5
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 2.0e-38 164.1 184 48.9
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 3.4e-38 163.3 193 45.1
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 2.2e-37 160.6 184 46.2
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 1.7e-34 151.0 155 48.4
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 4.3e-33 146.4 292 32.5
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 1.4e-28 131.3 102 60.8
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 1.8e-28 131.0 264 33.7
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 1.2e-24 118.2 94 59.6
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 5.2e-23 112.8 157 41.4
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 2.4e-20 104.0 124 46.0
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 2.4e-20 104.0 124 46.0
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 5.4e-20 102.8 124 46.0
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 5.4e-20 102.8 124 46.0
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 1.6e-19 101.3 124 45.2
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 2.0e-19 100.9 124 45.2
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 2.7e-19 100.5 126 46.8
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 5.6e-17 92.8 112 45.5
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 5.6e-17 92.8 112 45.5
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 3.6e-16 90.1 198 34.3
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 3.6e-16 90.1 77 59.7
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 6.2e-16 89.4 156 34.0
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-15 88.6 96 49.0
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 5.2e-15 86.3 97 44.3
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 1.3e-13 81.6 80 51.2
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 1.8e-07 61.2 111 38.7


User provided reference genes

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