Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44539 Davidia involucrata HOM05D006838 ORTHO05D008915 5.9e-64 247.3 117 100.0
Dinv13999 Davidia involucrata HOM05D006838 ORTHO05D008915 1.7e-47 192.6 105 86.7
CSS0050318 Camellia sinensis var. sinensis HOM05D006838 ORTHO05D008915 6.1e-45 184.1 105 82.9
Actinidia08489 Actinidia chinensis HOM05D006838 ORTHO05D008915 1.2e-43 179.9 105 81.0
Hund12124 Selenicereus undatus HOM05D006838 ORTHO05D008915 1.5e-43 179.5 105 77.1
Nn4g26336 Nelumbo nucifera HOM05D006838 ORTHO05D008915 2.6e-43 178.7 105 76.2
vmacro15346 Vaccinium macrocarpon HOM05D006838 ORTHO05D008915 4.4e-43 177.9 107 77.6
Rhsim02G0025700 Rhododendron simsii HOM05D000001 ORTHO05D000003 9.8e-43 176.8 116 74.1
TAR365G1174 Trochodendron aralioides HOM05D006838 ORTHO05D008915 9.8e-43 176.8 105 76.2
arahy.Tifrunner.gnm1.ann1.00V3DL Arachis hypogaea HOM05D006838 ORTHO05D008915 1.3e-42 176.4 106 76.4
Nitab4.5_0001342g0050 Nicotiana tabacum HOM05D006838 ORTHO05D008915 2.2e-42 175.6 104 79.8
arahy.Tifrunner.gnm1.ann1.08EL86 Arachis hypogaea HOM05D006838 ORTHO05D008915 2.8e-42 175.3 106 74.5
Manes.03G177700 Manihot esculenta HOM05D006838 ORTHO05D008915 3.7e-42 174.9 105 74.3
AUR62033621 Chenopodium quinoa HOM05D006838 ORTHO05D008915 1.1e-41 173.3 105 73.3
MSTRG.4035 Avicennia marina HOM05D006838 ORTHO05D008915 1.4e-41 172.9 110 73.6
Gorai.002G024200 Gossypium raimondii HOM05D006838 ORTHO05D008915 1.4e-41 172.9 105 75.2
Gohir.D01G021700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 1.8e-41 172.6 105 75.2
Nitab4.5_0000316g0010 Nicotiana tabacum HOM05D006838 ORTHO05D008915 1.8e-41 172.6 104 78.8
Solyc09g082115.1 Solanum lycopersicum HOM05D006838 ORTHO05D008915 4.1e-41 171.4 103 74.8
FvH4_4g16340 Fragaria vesca HOM05D006838 ORTHO05D008915 9.1e-41 170.2 104 74.0
FAN12G2261 Fragaria x ananassa HOM05D006838 ORTHO05D008915 9.1e-41 170.2 104 74.0
Gohir.A01G023700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 9.1e-41 170.2 105 74.3
AUR62038604 Chenopodium quinoa HOM05D006838 ORTHO05D008915 1.2e-40 169.9 105 72.4
FAN17G0591 Fragaria x ananassa HOM05D006838 ORTHO05D008915 1.2e-40 169.9 104 74.0
CAN.G1094.4 Capsicum annuum HOM05D006838 ORTHO05D008915 1.6e-40 169.5 103 74.8
Sc13g0004470 Simmondsia chinensis HOM05D006838 ORTHO05D008915 2.7e-40 168.7 105 74.3
Sopen09g031000 Solanum pennellii HOM05D006838 ORTHO05D008915 2.7e-40 168.7 103 72.8
Cc03_g03870 Coffea canephora HOM05D006838 ORTHO05D008915 4.5e-40 167.9 104 75.0
Haze_00889 Corylus avellana HOM05D000001 ORTHO05D000003 4.5e-40 167.9 104 71.2
Sabra08G0117200 Salix brachista HOM05D006838 ORTHO05D008915 4.5e-40 167.9 110 71.8
EL10Ac3g06416 Beta vulgaris HOM05D006838 ORTHO05D008915 5.9e-40 167.5 105 72.4
Cfa015659 Carpinus fangiana HOM05D006838 ORTHO05D008915 1.3e-39 166.4 104 69.2
PGSC0003DMG400032255 Solanum tuberosum HOM05D006838 ORTHO05D008915 1.3e-39 166.4 103 72.8
Ciclev10006131m.g Citrus clementina HOM05D006838 ORTHO05D008915 1.7e-39 166.0 107 72.0
RcHm_v2.0_Chr4g0416051 Rosa chinensis HOM05D006838 ORTHO05D008915 2.3e-39 165.6 108 72.2
Duzib052G0907 Durio zibethinus HOM05D006838 ORTHO05D008915 3.8e-39 164.9 105 71.4
TWI73G0194 Tripterygium wilfordii HOM05D006838 ORTHO05D008915 5.0e-39 164.5 105 69.5
Peaxi162Scf00092g00717 Petunia axillaris HOM05D006838 ORTHO05D008915 8.6e-39 163.7 104 76.0
Potri.010G087000 Populus trichocarpa HOM05D006838 ORTHO05D008915 8.6e-39 163.7 105 68.6
Medtr5g006360 Medicago truncatula HOM05D006838 ORTHO05D008915 1.1e-38 163.3 99 70.7
CANSAT78G0040 Cannabis sativa HOM05D006838 ORTHO05D008915 1.5e-38 162.9 99 71.7
Ah.13g072770 Amaranthus hybridus HOM05D006838 ORTHO05D008915 2.5e-38 162.2 107 70.1
Psat4g210280 Pisum sativum HOM05D006838 ORTHO05D008915 4.2e-38 161.4 106 67.0
MD13G1194100 Malus domestica HOM05D006838 ORTHO05D008915 5.5e-38 161.0 104 70.2
TPR.G37905 Trifolium pratense HOM05D006838 ORTHO05D008915 5.5e-38 161.0 107 68.2
Thecc.04G232900 Theobroma cacao HOM05D006838 ORTHO05D008915 9.5e-38 160.2 105 72.4
Atru.chr4.2454 Acer truncatum HOM05D006838 ORTHO05D008915 1.2e-37 159.8 105 69.5
QL06p002133 Quercus lobata HOM05D006838 ORTHO05D008915 1.2e-37 159.8 104 67.3
Eucgr.H03460 Eucalyptus grandis HOM05D006838 ORTHO05D008915 1.6e-37 159.5 104 70.2
Lsat_1_v5_gn_5_35600 Lactuca sativa HOM05D006838 ORTHO05D008915 1.6e-37 159.5 103 74.8
Aqoxy5G00461 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 3.6e-37 158.3 101 70.3
Eucgr.H03458 Eucalyptus grandis HOM05D006838 ORTHO05D008915 3.6e-37 158.3 104 70.2
CiPaw.01G167000 Carya illinoinensis HOM05D006838 ORTHO05D008915 6.1e-37 157.5 109 67.9
Ca_24400_v3 Cicer arietinum L. HOM05D006838 ORTHO05D008915 6.1e-37 157.5 119 63.0
Prupe.1G014900 Prunus persica HOM05D006838 ORTHO05D008915 6.1e-37 157.5 104 71.2
Lsat_1_v5_gn_5_35680 Lactuca sativa HOM05D006838 ORTHO05D008915 1.0e-36 156.8 103 72.8
SalBow2G1460 Salvia bowleyana HOM05D001359 ORTHO05D001200 1.0e-36 156.8 104 67.3
DCAR_030640 Daucus carota HOM05D006838 ORTHO05D008915 5.2e-36 154.5 103 70.9
Aa31LG5G4930 Aethionema arabicum HOM05D006838 ORTHO05D008915 6.8e-36 154.1 105 65.7
Cpa.g.sc58.98 Carica papaya HOM05D006838 ORTHO05D008915 8.9e-36 153.7 105 67.6
SGA_v2.0_scaffold39G15215 Striga asiatica HOM05D006838 ORTHO05D008915 1.2e-35 153.3 105 69.5
LjContig00408g0014048 Lotus japonicus HOM05D006838 ORTHO05D008915 1.5e-35 152.9 104 63.5
GSVIVG01017987001 Vitis vinifera HOM05D006838 ORTHO05D008915 2.0e-35 152.5 105 62.9
CARHR125890 Cardamine hirsuta HOM05D006838 ORTHO05D008915 2.6e-35 152.1 99 66.7
PGR004G0798 Punica granatum HOM05D006838 ORTHO05D008915 2.6e-35 152.1 105 70.5
SHI00446 Sapria himalayana HOM05D006838 ORTHO05D008915 5.7e-35 151.0 104 63.5
CsaV3_7G022460 Cucumis sativus L. HOM05D006838 ORTHO05D008915 7.5e-35 150.6 104 66.3
Migut.G00344 Erythranthe guttata HOM05D006838 ORTHO05D008915 1.3e-34 149.8 99 70.7
unitig_32.g11729 Utricularia gibba HOM05D006838 ORTHO05D008915 2.8e-34 148.7 103 70.9
Thhalv10017983m.g Eutrema salsugineum HOM05D006838 ORTHO05D008915 4.9e-34 147.9 99 64.6
AL4G27470 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 8.3e-34 147.1 99 64.6
AT2G32090 Arabidopsis thaliana HOM05D006838 ORTHO05D008915 1.8e-33 146.0 99 63.6
THA.LOC104816050 Tarenaya hassleriana HOM05D006838 ORTHO05D008915 2.4e-33 145.6 106 65.1
PSO210G6947 Papaver somniferum HOM05D006838 ORTHO05D008915 3.1e-33 145.2 103 59.2
AL103U10040 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 4.1e-33 144.8 99 64.6
HanXRQChr10g0288871 Helianthus annuus HOM05D006838 ORTHO05D008915 4.1e-33 144.8 106 67.0
PSO832G4526 Papaver somniferum HOM05D006838 ORTHO05D008915 4.1e-33 144.8 103 59.2
ECA246G0107 Erigeron canadensis HOM05D006838 ORTHO05D008915 5.4e-33 144.4 105 66.7
C04p17530 Brassica napus HOM05D006838 ORTHO05D008915 9.2e-33 143.7 99 62.6
BolC4t23300H Brassica oleracea HOM05D006838 ORTHO05D008915 9.2e-33 143.7 99 62.6
MELO3C012654.2 Cucumis melo HOM05D006838 ORTHO05D008915 9.2e-33 143.7 104 64.4
Sp4g14500 Schrenkiella parvula HOM05D006838 ORTHO05D008915 1.6e-32 142.9 99 62.6
A05p13410 Brassica napus HOM05D006838 ORTHO05D008915 2.0e-32 142.5 99 62.6
Aqoxy6G02670 Aquilegia oxysepala HOM05D006838 ORTHO05D008915 3.5e-32 141.7 91 70.3
BraA05t20279Z Brassica rapa HOM05D006838 ORTHO05D008915 4.5e-32 141.4 99 62.6
SalBow2G1378 Salvia bowleyana HOM05D006838 ORTHO05D008915 4.5e-32 141.4 124 55.6
MBI11_g31274_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 5.9e-32 141.0 107 60.7
Sed0026467 Sechium edule HOM05D006838 ORTHO05D008915 5.9e-32 141.0 104 63.5
BcaB02g10450 Brassica carinata HOM05D006838 ORTHO05D008915 1.7e-31 139.4 100 62.0
Actinidia36957 Actinidia chinensis HOM05D006838 ORTHO05D008915 3.8e-31 138.3 106 67.0
Carub.0004s1344 Capsella rubella HOM05D006838 ORTHO05D008915 3.3e-30 135.2 99 59.6
MBI11_g31275_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 1.2e-29 133.3 115 55.7
CDE05G3614 Ceratophyllum demersum HOM05D006838 ORTHO05D008915 1.4e-28 129.8 131 48.9
MBI12_g03925_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 7.5e-27 124.0 107 55.1
COL.COLO4_21487 Corchorus olitorius HOM05D006838 ORTHO05D000003 4.9e-26 121.3 78 71.8
RcHm_v2.0_Chr4g0409411 Rosa chinensis HOM05D006838 ORTHO05D008915 2.4e-25 119.0 104 53.8
Aqoxy4G00384 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.2e-24 116.7 73 69.9
Medtr5g006370 Medicago truncatula HOM05D006838 ORTHO05D008915 1.2e-24 116.7 106 51.9
AagrBONN_evm.TU.Sc2ySwM_362.295 Anthoceros agrestis HOM05D006838 ORTHO05D008915 1.6e-24 116.3 107 46.7
FAN22G1840 Fragaria x ananassa HOM05D006838 ORTHO05D008915 1.3e-23 113.2 104 52.9
FvH4_1g03680 Fragaria vesca HOM05D006838 ORTHO05D008915 2.3e-23 112.5 104 51.9
SEGI_21646 Sequoiadendron giganteum HOM05D006838 ORTHO05D008915 1.9e-22 109.4 99 47.5
AagrBONN_evm.TU.Sc2ySwM_362.293 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.5e-22 107.1 104 43.3
ATR0697G082 Amborella trichopoda HOM05D006838 ORTHO05D008915 1.6e-21 106.3 99 47.5
FAN19G3212 Fragaria x ananassa HOM05D006838 ORTHO05D008915 2.1e-21 105.9 105 50.5
Pp3c10_20820 Physcomitrium patens HOM05D006838 ORTHO05D008915 1.1e-20 103.6 105 43.8
TPR.G14291 Trifolium pratense HOM05D006838 ORTHO05D008915 1.4e-20 103.2 100 49.0
TPR.G38007 Trifolium pratense HOM05D006838 ORTHO05D008915 5.2e-20 101.3 100 48.0
FAN17G0416 Fragaria x ananassa HOM05D006838 ORTHO05D001690 1.2e-19 100.1 104 49.0
Zm00001eb052640 Zea mays HOM05D006838 ORTHO05D008915 2.6e-19 99.0 100 49.0
Mapoly0185s0021 Marchantia polymorpha HOM05D006838 ORTHO05D008915 4.4e-19 98.2 105 41.9
Os03g0659300 Oryza sativa ssp. japonica HOM05D006838 ORTHO05D008915 7.5e-19 97.4 100 47.0
Potri.008G153602 Populus trichocarpa HOM05D006838 ORTHO05D008915 2.9e-18 95.5 57 71.9
SMO304G0126 Selaginella moellendorffii HOM05D006838 ORTHO05D008915 5.4e-17 91.3 105 44.8
RcHm_v2.0_Chr4g0416061 Rosa chinensis HOM05D006838 ORTHO05D008915 7.0e-17 90.9 92 50.0
RcHm_v2.0_Chr4g0432191 Rosa chinensis HOM05D006838 ORTHO05D008915 2.8e-13 79.0 50 70.0
HPP92_017391 Vanilla planifolia HOM05D006838 ORTHO05D008915 1.8e-12 76.3 60 51.7
Actinidia25664 Actinidia chinensis HOM05D006838 ORTHO05D008915 4.1e-09 65.1 46 69.6
Actinidia13041 Actinidia chinensis HOM05D006838 ORTHO05D055396 9.2e-09 63.9 31 83.9
Sabra10G0056600 Salix brachista HOM05D006838 ORTHO05D008915 1.6e-08 63.2 52 57.7
FAN12G2595 Fragaria x ananassa HOM05D006838 ORTHO05D046149 3.5e-08 62.0 86 40.7


User provided reference genes

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