Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44470 Davidia involucrata HOM05D005371 ORTHO05D006863 1.0e-105 386.7 196 100.0
Dinv38368 Davidia involucrata HOM05D002181 ORTHO05D003287 2.8e-74 282.3 217 69.6
Actinidia00081 Actinidia chinensis HOM05D005371 ORTHO05D006863 4.7e-74 281.6 230 65.7
vmacro15298 Vaccinium macrocarpon HOM05D005371 ORTHO05D006863 6.2e-74 281.2 230 66.5
CSS0011749 Camellia sinensis var. sinensis HOM05D005371 ORTHO05D006863 2.3e-73 279.3 230 65.7
CSS0026299 Camellia sinensis var. sinensis HOM05D005371 ORTHO05D006863 2.3e-73 279.3 230 65.7
Hma1.2p1_3925F.1_g337960 Hydrangea macrophylla HOM05D005371 ORTHO05D006863 2.3e-73 279.3 238 65.1
Cc03_g02980 Coffea canephora HOM05D005371 ORTHO05D006863 1.2e-72 276.9 235 64.7
Rhsim02G0018900 Rhododendron simsii HOM05D005371 ORTHO05D006863 3.7e-71 271.9 230 64.8
Lj6P663T68 Lonicera japonica HOM05D005371 ORTHO05D006863 7.0e-70 267.7 216 65.3
Peaxi162Scf00589g00036 Petunia axillaris HOM05D005371 ORTHO05D006863 1.3e-68 263.5 230 63.5
Nitab4.5_0012725g0010 Nicotiana tabacum HOM05D005371 ORTHO05D006863 3.9e-68 261.9 230 62.6
TAR362G1168 Trochodendron aralioides HOM05D005371 ORTHO05D006863 3.9e-68 261.9 230 63.0
PGR031G1359 Punica granatum HOM05D005371 ORTHO05D006863 8.6e-68 260.8 230 61.7
Nitab4.5_0007396g0010 Nicotiana tabacum HOM05D005371 ORTHO05D006863 1.5e-67 260.0 230 62.2
Lj6g0013027 Lotus japonicus HOM05D005371 ORTHO05D006863 3.3e-67 258.8 230 60.0
Oeu023656.1 Olea europaea HOM05D005371 ORTHO05D006863 4.3e-67 258.5 230 60.9
Eucgr.B01158 Eucalyptus grandis HOM05D005371 ORTHO05D006863 1.2e-66 256.9 238 59.7
CANSAT78G0247 Cannabis sativa HOM05D005371 ORTHO05D006863 2.1e-66 256.1 230 61.3
MELO3C006575.2 Cucumis melo HOM05D005371 ORTHO05D006863 2.1e-66 256.1 230 60.4
DCAR_021293 Daucus carota HOM05D005371 ORTHO05D006863 3.6e-66 255.4 230 59.6
CsaV3_3G013820 Cucumis sativus L. HOM05D005371 ORTHO05D006863 4.7e-66 255.0 230 60.9
TAR633G1547 Trochodendron aralioides HOM05D005371 ORTHO05D006863 4.7e-66 255.0 230 61.3
EL10Ac6g13948 Beta vulgaris HOM05D005371 ORTHO05D006863 1.1e-65 253.8 230 60.4
Solyc11g005900.2 Solanum lycopersicum HOM05D005371 ORTHO05D006863 1.1e-65 253.8 230 60.9
Sopen11g001840 Solanum pennellii HOM05D005371 ORTHO05D006863 1.1e-65 253.8 230 60.9
PGSC0003DMG400035738 Solanum tuberosum HOM05D005371 ORTHO05D006863 1.1e-65 253.8 230 60.9
Lsat_1_v5_gn_8_20540 Lactuca sativa HOM05D005371 ORTHO05D006863 1.4e-65 253.4 230 59.6
Prupe.1G149000 Prunus persica HOM05D005371 ORTHO05D006863 3.1e-65 252.3 230 59.6
VMungo0540G1614 Vigna mungo HOM05D000137 ORTHO05D000503 4.0e-65 251.9 230 59.6
MD13G1180900 Malus domestica HOM05D005371 ORTHO05D006863 6.8e-65 251.1 230 59.6
SalBow2G1082 Salvia bowleyana HOM05D000137 ORTHO05D000503 1.2e-64 250.4 230 58.7
Aqoxy7G00162 Aquilegia oxysepala HOM05D005371 ORTHO05D006863 2.0e-64 249.6 225 62.2
MSTRG.3982 Avicennia marina HOM05D005371 ORTHO05D006863 4.4e-64 248.4 228 60.1
CAN.G652.5 Capsicum annuum HOM05D005371 ORTHO05D006863 4.4e-64 248.4 230 60.0
Oeu037674.1 Olea europaea HOM05D005371 ORTHO05D006863 4.4e-64 248.4 230 59.1
Ah.13g074330 Amaranthus hybridus HOM05D005371 ORTHO05D006863 7.5e-64 247.7 230 59.1
Phvul.006G155400 Phaseolus vulgaris HOM05D005371 ORTHO05D006863 7.5e-64 247.7 230 58.3
Haze_00980 Corylus avellana HOM05D005371 ORTHO05D006863 9.9e-64 247.3 230 57.4
Haze_00986 Corylus avellana HOM05D005371 ORTHO05D006863 9.9e-64 247.3 230 57.4
Psat1g184760 Pisum sativum HOM05D005371 ORTHO05D006863 9.9e-64 247.3 230 57.0
ClCG05G005500 Citrullus lanatus HOM05D005371 ORTHO05D006863 1.7e-63 246.5 230 59.6
MD16G1181600 Malus domestica HOM05D005371 ORTHO05D006863 2.9e-63 245.7 230 59.1
MBI13_g15010_MAGBIO Magnolia biondii HOM05D005371 ORTHO05D006863 3.7e-63 245.4 229 59.8
Sed0019484 Sechium edule HOM05D005371 ORTHO05D006863 3.7e-63 245.4 230 58.7
FvH4_4g14220 Fragaria vesca HOM05D005371 ORTHO05D006863 4.9e-63 245.0 216 60.6
FAN07G1015 Fragaria x ananassa HOM05D005371 ORTHO05D006863 6.4e-63 244.6 216 60.6
Cfa015560 Carpinus fangiana HOM05D005371 ORTHO05D006863 8.3e-63 244.2 230 57.0
Glyma.15G102400 Glycine max HOM05D005371 ORTHO05D006863 1.4e-62 243.4 230 57.4
Sc19g0004630 Simmondsia chinensis HOM05D005371 ORTHO05D006863 2.4e-62 242.7 230 59.6
HanXRQChr08g0218651 Helianthus annuus HOM05D005371 ORTHO05D006863 3.2e-62 242.3 230 57.4
Ca_00612_v3 Cicer arietinum L. HOM05D005371 ORTHO05D006863 4.1e-62 241.9 230 57.4
RcHm_v2.0_Chr4g0418951 Rosa chinensis HOM05D005371 ORTHO05D006863 4.1e-62 241.9 216 60.6
MSTRG.24760 Avicennia marina HOM05D005371 ORTHO05D006863 9.2e-62 240.7 230 57.0
CiPaw.01G158300 Carya illinoinensis HOM05D005371 ORTHO05D006863 9.2e-62 240.7 225 58.2
COL.COLO4_21626 Corchorus olitorius HOM05D005371 ORTHO05D006863 2.1e-61 239.6 219 60.3
Sed0017990 Sechium edule HOM05D005371 ORTHO05D006863 3.5e-61 238.8 230 58.3
TWI53G1142 Tripterygium wilfordii HOM05D005371 ORTHO05D006863 6.0e-61 238.0 230 57.0
Thecc.04G219500 Theobroma cacao HOM05D005371 ORTHO05D006863 3.0e-60 235.7 219 59.8
Glyma.13G210400 Glycine max HOM05D005371 ORTHO05D006863 6.6e-60 234.6 231 56.7
ECA232G2257 Erigeron canadensis HOM05D005371 ORTHO05D006863 8.6e-60 234.2 231 55.0
HPP92_012442 Vanilla planifolia HOM05D005371 ORTHO05D006863 1.5e-59 233.4 219 59.4
Gohir.D09G194600 Gossypium hirsutum HOM05D005371 ORTHO05D006863 1.9e-59 233.0 218 59.2
Gorai.006G218000 Gossypium raimondii HOM05D005371 ORTHO05D006863 1.9e-59 233.0 218 59.2
TPR.G28919 Trifolium pratense HOM05D005371 ORTHO05D006863 3.3e-59 232.3 230 53.0
Manes.03G186400 Manihot esculenta HOM05D005371 ORTHO05D006863 4.3e-59 231.9 230 56.5
SGA_v2.0_scaffold107G30774 Striga asiatica HOM05D005371 ORTHO05D006863 4.3e-59 231.9 228 54.4
Gohir.A09G200400 Gossypium hirsutum HOM05D005371 ORTHO05D006863 7.3e-59 231.1 218 58.7
Sabra08G0160600 Salix brachista HOM05D005371 ORTHO05D006863 9.5e-59 230.7 230 56.5
Zm00001eb015260 Zea mays HOM05D005371 ORTHO05D006863 2.1e-58 229.6 213 58.2
Gorai.011G168200 Gossypium raimondii HOM05D005371 ORTHO05D006863 2.8e-58 229.2 218 59.2
Duzib151G0238 Durio zibethinus HOM05D005371 ORTHO05D006863 3.6e-58 228.8 218 58.3
Migut.N00142 Erythranthe guttata HOM05D005371 ORTHO05D006863 3.6e-58 228.8 230 54.3
Nn2g14732 Nelumbo nucifera HOM05D005371 ORTHO05D006863 3.6e-58 228.8 230 56.5
Actinidia08521 Actinidia chinensis HOM05D005371 ORTHO05D006863 6.2e-58 228.0 172 70.9
Potri.008G200600 Populus trichocarpa HOM05D005371 ORTHO05D006863 6.2e-58 228.0 223 56.5
Potri.010G029400 Populus trichocarpa HOM05D005371 ORTHO05D006863 8.1e-58 227.6 223 57.0
Cpa.g.sc16.46 Carica papaya HOM05D005371 ORTHO05D006863 1.4e-57 226.9 198 60.6
Os03g0320900 Oryza sativa ssp. japonica HOM05D005371 ORTHO05D006863 4.0e-57 225.3 213 57.3
Medtr2g021320 Medicago truncatula HOM05D005371 ORTHO05D006863 5.2e-57 224.9 230 53.0
ATR0307G094 Amborella trichopoda HOM05D005371 ORTHO05D006863 1.2e-56 223.8 220 57.7
Ciclev10026219m.g Citrus clementina HOM05D005371 ORTHO05D006863 1.2e-56 223.8 219 57.1
unitig_8.g3082 Utricularia gibba HOM05D001103 ORTHO05D000954 1.2e-56 223.8 228 53.1
CDE02G4078 Ceratophyllum demersum HOM05D005371 ORTHO05D006863 2.6e-56 222.6 195 61.5
AUR62002624 Chenopodium quinoa HOM05D005371 ORTHO05D006863 2.6e-56 222.6 169 69.2
Hund12213 Selenicereus undatus HOM05D005371 ORTHO05D006863 2.6e-56 222.6 169 69.2
AUR62030040 Chenopodium quinoa HOM05D005371 ORTHO05D006863 3.4e-56 222.2 169 69.2
Atru.chr4.2593 Acer truncatum HOM05D005371 ORTHO05D006863 4.4e-56 221.9 211 57.8
AL3G17060 Arabidopsis lyrata HOM05D005371 ORTHO05D006863 3.8e-55 218.8 230 51.7
PSO135G0635 Papaver somniferum HOM05D005371 ORTHO05D006863 3.8e-55 218.8 230 52.6
QL06p005861 Quercus lobata HOM05D005371 ORTHO05D006863 3.8e-55 218.8 228 52.6
AT3G06200 Arabidopsis thaliana HOM05D005371 ORTHO05D006863 4.9e-55 218.4 230 51.7
Ciclev10005567m.g Citrus clementina HOM05D005371 ORTHO05D006863 6.4e-55 218.0 212 56.1
BcaC05g30047 Brassica carinata HOM05D005371 ORTHO05D006863 1.1e-54 217.2 224 52.2
Thhalv10016095m.g Eutrema salsugineum HOM05D005371 ORTHO05D006863 1.4e-54 216.9 224 53.6
TAR362G1313 Trochodendron aralioides HOM05D005371 ORTHO05D006863 1.9e-54 216.5 187 64.7
Sp3g05120 Schrenkiella parvula HOM05D005371 ORTHO05D006863 3.2e-54 215.7 233 52.4
Sp6g25400 Schrenkiella parvula HOM05D005371 ORTHO05D006863 3.2e-54 215.7 217 53.5
Aa31LG5G16730 Aethionema arabicum HOM05D005371 ORTHO05D006863 5.4e-54 214.9 219 52.5
CARHR080720 Cardamine hirsuta HOM05D005371 ORTHO05D006863 5.4e-54 214.9 230 50.0
Aa31LG11G10740 Aethionema arabicum HOM05D005371 ORTHO05D006863 9.2e-54 214.2 219 51.6
C05p61030 Brassica napus HOM05D005371 ORTHO05D006863 1.6e-53 213.4 220 54.1
Carub.0003s0564 Capsella rubella HOM05D005371 ORTHO05D006863 1.6e-53 213.4 230 51.3
MELO3C006574.2 Cucumis melo HOM05D005371 ORTHO05D006863 1.6e-53 213.4 230 53.0
BcaC05g29797 Brassica carinata HOM05D005371 ORTHO05D006863 2.1e-53 213.0 220 54.1
BraA05t22898Z Brassica rapa HOM05D005371 ORTHO05D006863 2.1e-53 213.0 220 54.1
Migut.G00256 Erythranthe guttata HOM05D005371 ORTHO05D006863 4.6e-53 211.8 221 52.5
Lalb_Chr20g0118351 Lupinus albus HOM05D005371 ORTHO05D006863 6.0e-53 211.5 213 54.5
BolC5t34759H Brassica oleracea HOM05D005371 ORTHO05D006863 2.3e-52 209.5 220 53.2
A05p41790 Brassica napus HOM05D005371 ORTHO05D006863 6.6e-52 208.0 235 50.6
CsaV3_3G013810 Cucumis sativus L. HOM05D005371 ORTHO05D006863 6.6e-52 208.0 230 52.2
Atru.chr4.2595 Acer truncatum HOM05D005371 ORTHO05D006863 2.5e-51 206.1 206 55.8
SEGI_38554 Sequoiadendron giganteum HOM05D005371 ORTHO05D006863 8.1e-50 201.1 201 52.7
AagrBONN_evm.TU.Sc2ySwM_117.1044 Anthoceros agrestis HOM05D005371 ORTHO05D006863 1.8e-49 199.9 215 50.2
Pp3c7_19190 Physcomitrium patens HOM05D005371 ORTHO05D006863 6.9e-49 198.0 214 50.0
Gohir.D10G151100 Gossypium hirsutum HOM05D005371 ORTHO05D006863 1.2e-48 197.2 184 59.2
CDE06G0660 Ceratophyllum demersum HOM05D005371 ORTHO05D006863 5.8e-48 194.9 116 81.9
FAN12G2714 Fragaria x ananassa HOM05D005371 ORTHO05D006863 1.1e-46 190.7 128 72.7
CARHR194010 Cardamine hirsuta HOM05D005371 ORTHO05D006863 5.4e-46 188.3 124 74.2
Mapoly0103s0074 Marchantia polymorpha HOM05D005371 ORTHO05D006863 3.0e-44 182.6 217 47.5
Carub.0006s1730 Capsella rubella HOM05D005371 ORTHO05D006863 5.1e-44 181.8 123 69.9
Thhalv10021285m.g Eutrema salsugineum HOM05D005371 ORTHO05D006863 1.1e-43 180.6 133 65.4
CsaV3_7G008570 Cucumis sativus L. HOM05D005371 ORTHO05D006863 1.6e-42 176.8 230 46.5
CBR_g11013 Chara braunii HOM05D005371 ORTHO05D006863 3.1e-41 172.6 212 45.3
CBR_g4816 Chara braunii HOM05D005371 ORTHO05D006863 5.8e-40 168.3 211 45.0
Haze_00989 Corylus avellana HOM05D005371 ORTHO05D006863 5.8e-40 168.3 176 52.8
SMO347G0347 Selaginella moellendorffii HOM05D005371 ORTHO05D006863 2.9e-39 166.0 143 60.8
Gohir.A10G115500 Gossypium hirsutum HOM05D005371 ORTHO05D006863 4.2e-38 162.2 125 66.4
Cre02.g084950 Chlamydomonas reinhardtii HOM05D005371 ORTHO05D006863 2.7e-37 159.5 224 42.9
MCO11G301 Micromonas commoda HOM05D005371 ORTHO05D006863 2.7e-37 159.5 203 44.8
PRCOL_00006380 Prasinoderma coloniale HOM05D005371 ORTHO05D006863 1.8e-36 156.8 220 43.2
SEGI_16229 Sequoiadendron giganteum HOM05D005371 ORTHO05D006863 3.0e-36 156.0 103 72.8
VMungo1080G0303 Vigna mungo HOM05D005371 ORTHO05D006863 1.1e-30 137.5 141 55.3
MELO3C018452.2 Cucumis melo HOM05D005371 ORTHO05D006863 6.9e-25 118.2 92 65.2
HPP92_028178 Vanilla planifolia HOM05D005371 ORTHO05D006863 8.4e-23 111.3 72 79.2
Pp3s46_30 Physcomitrium patens HOM05D003344 ORTHO05D003981 3.9e-20 102.4 191 35.6
MD12G1097700 Malus domestica HOM05D005371 ORTHO05D006863 6.1e-13 78.6 52 69.2
Cfa022053 Carpinus fangiana HOM05D003344 ORTHO05D003981 5.7e-11 72.0 90 44.4
Haze_26384 Corylus avellana HOM05D003344 ORTHO05D003981 4.8e-10 68.9 90 37.8
Cre09.g394102 Chlamydomonas reinhardtii HOM05D003344 ORTHO05D003981 1.1e-09 67.8 93 39.8
HanXRQChr10g0304241 Helianthus annuus HOM05D005371 ORTHO05D006863 1.5e-08 63.9 32 87.5
FAN17G2777 Fragaria x ananassa HOM05D005371 ORTHO05D006863 2.0e-08 63.5 46 71.7
Pp3c4_12390 Physcomitrium patens HOM05D003344 ORTHO05D003981 2.2e-07 60.1 173 27.7
C05p61040 Brassica napus HOM05D000171 ORTHO05D000101 6.5e-07 58.5 101 35.6
BolC5t34761H Brassica oleracea HOM05D000171 ORTHO05D000101 6.5e-07 58.5 101 35.6
Os12g0515600 Oryza sativa ssp. japonica HOM05D003344 ORTHO05D003981 6.5e-07 58.5 190 25.8
CDE10G0037 Ceratophyllum demersum HOM05D003344 ORTHO05D003981 1.1e-06 57.8 90 40.0
MCO03G128 Micromonas commoda HOM05D003344 ORTHO05D003981 1.1e-06 57.8 90 41.1
CDE10G0230 Ceratophyllum demersum HOM05D003344 ORTHO05D003981 1.4e-06 57.4 90 40.0
SGA_v2.0_scaffold105G30432 Striga asiatica HOM05D003344 ORTHO05D003981 1.4e-06 57.4 90 37.8
HPP92_014270 Vanilla planifolia HOM05D003344 ORTHO05D003981 1.4e-06 57.4 76 42.1
Cre08.g377350 Chlamydomonas reinhardtii HOM05D003344 ORTHO05D003981 1.9e-06 57.0 77 41.6
Glyma.08G237000 Glycine max HOM05D005371 ORTHO05D034977 1.9e-06 57.0 61 54.1
PRCOL_00000840 Prasinoderma coloniale HOM05D003344 ORTHO05D003981 1.9e-06 57.0 79 41.8
PRCOL_00003707 Prasinoderma coloniale HOM05D003344 ORTHO05D034372 2.5e-06 56.6 76 40.8
AagrBONN_evm.TU.Sc2ySwM_228.3822 Anthoceros agrestis HOM05D003344 ORTHO05D003981 3.2e-06 56.2 79 41.8
MSTRG.19875 Avicennia marina HOM05D003344 ORTHO05D003981 3.2e-06 56.2 90 37.8
Eucgr.A02380 Eucalyptus grandis HOM05D003344 ORTHO05D003981 3.2e-06 56.2 90 38.9
VMungo0331G0541 Vigna mungo HOM05D005371 ORTHO05D006863 3.2e-06 56.2 74 48.6
Oeu008130.1 Olea europaea HOM05D003344 ORTHO05D003981 5.5e-06 55.5 91 36.3
Pp3c10_16780 Physcomitrium patens HOM05D003344 ORTHO05D003981 5.5e-06 55.5 176 28.4
Aqoxy7G02261 Aquilegia oxysepala HOM05D005371 ORTHO05D000006 7.2e-06 55.1 31 77.4
Ca_08473_v3 Cicer arietinum L. HOM05D003344 ORTHO05D003981 7.2e-06 55.1 90 37.8
Prupe.7G065100 Prunus persica HOM05D003344 ORTHO05D003981 7.2e-06 55.1 90 37.8
Lj2A380G69 Lonicera japonica HOM05D003344 ORTHO05D003981 9.4e-06 54.7 76 39.5
MD12G1069000 Malus domestica HOM05D003344 ORTHO05D003981 9.4e-06 54.7 90 37.8
Pp3c12_17390 Physcomitrium patens HOM05D003344 ORTHO05D003981 9.4e-06 54.7 176 27.3
PGR004G2219 Punica granatum HOM05D003344 ORTHO05D003981 9.4e-06 54.7 90 37.8
RcHm_v2.0_Chr3g0481461 Rosa chinensis HOM05D003344 ORTHO05D003981 9.4e-06 54.7 90 36.7


User provided reference genes

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