Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 2.3e-59 231.9 107 100.0
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 3.4e-42 174.9 107 77.6
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.0e-34 149.1 72 87.5
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 5.8e-34 147.5 69 89.9
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 9.9e-34 146.7 72 86.1
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.9e-33 144.4 72 83.3
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 4.9e-33 144.4 72 86.1
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 8.4e-33 143.7 72 84.7
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.1e-32 143.3 72 84.7
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 1.1e-32 143.3 72 86.1
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 1.4e-32 142.9 100 68.0
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 5.4e-32 141.0 72 84.7
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 9.3e-32 140.2 72 83.3
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 1.2e-31 139.8 72 81.9
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 1.6e-31 139.4 72 83.3
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.6e-31 139.4 70 81.4
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 2.1e-31 139.0 69 85.5
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 2.1e-31 139.0 72 81.9
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.7e-31 138.7 72 83.3
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.7e-31 138.7 72 81.9
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 7.8e-31 137.1 72 80.6
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.0e-30 136.7 72 81.9
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.0e-30 136.7 71 81.7
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.0e-30 136.7 71 81.7
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.0e-30 136.7 69 82.6
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.3e-30 136.3 72 79.2
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 1.3e-30 136.3 89 67.4
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 1.7e-30 136.0 72 77.8
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 1.7e-30 136.0 112 56.2
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.7e-30 136.0 105 58.1
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 2.3e-30 135.6 100 64.0
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 2.3e-30 135.6 72 80.6
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 3.0e-30 135.2 72 77.8
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 3.0e-30 135.2 69 82.6
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 3.0e-30 135.2 100 65.0
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 3.0e-30 135.2 70 80.0
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 3.0e-30 135.2 70 78.6
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 3.9e-30 134.8 70 78.6
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.9e-30 134.8 70 78.6
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.9e-30 134.8 70 78.6
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 3.9e-30 134.8 70 78.6
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 5.1e-30 134.4 69 82.6
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 5.1e-30 134.4 72 79.2
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 5.1e-30 134.4 92 65.2
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 5.1e-30 134.4 106 57.5
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 6.6e-30 134.0 72 79.2
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 6.6e-30 134.0 106 57.5
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 8.7e-30 133.7 72 79.2
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 8.7e-30 133.7 70 77.1
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 8.7e-30 133.7 70 77.1
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 1.1e-29 133.3 69 81.2
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.1e-29 133.3 97 62.9
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 1.1e-29 133.3 69 81.2
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 1.1e-29 133.3 72 76.4
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.5e-29 132.9 72 76.4
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.9e-29 132.5 72 77.8
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.9e-29 132.5 71 76.1
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 2.5e-29 132.1 97 62.9
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 3.3e-29 131.7 72 76.4
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 3.3e-29 131.7 92 63.0
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.3e-29 131.7 72 76.4
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 4.3e-29 131.3 72 75.0
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 4.3e-29 131.3 112 54.5
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 7.3e-29 130.6 71 77.5
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 7.3e-29 130.6 72 75.0
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 9.6e-29 130.2 100 62.0
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 9.6e-29 130.2 72 75.0
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 9.6e-29 130.2 69 76.8
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 9.6e-29 130.2 72 75.0
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 9.6e-29 130.2 92 63.0
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 1.3e-28 129.8 69 79.7
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.3e-28 129.8 71 73.2
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 1.3e-28 129.8 89 65.2
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.1e-28 129.0 72 75.0
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 2.8e-28 128.6 78 67.9
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 2.8e-28 128.6 69 76.8
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 2.8e-28 128.6 69 75.4
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 3.6e-28 128.3 106 54.7
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 3.6e-28 128.3 106 54.7
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 3.6e-28 128.3 106 54.7
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 3.6e-28 128.3 106 54.7
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 3.6e-28 128.3 106 54.7
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 3.6e-28 128.3 106 54.7
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 3.6e-28 128.3 106 54.7
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 3.6e-28 128.3 106 54.7
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 3.6e-28 128.3 106 54.7
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 3.6e-28 128.3 112 53.6
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 3.6e-28 128.3 106 54.7
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 3.6e-28 128.3 106 54.7
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 3.6e-28 128.3 69 75.4
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 3.6e-28 128.3 108 52.8
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 3.6e-28 128.3 89 64.0
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 4.8e-28 127.9 103 55.3
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 4.8e-28 127.9 106 54.7
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 4.8e-28 127.9 69 75.4
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.8e-28 127.9 72 75.0
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 6.2e-28 127.5 72 73.6
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 6.2e-28 127.5 72 73.6
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 8.1e-28 127.1 106 53.8
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 8.1e-28 127.1 92 62.0
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.1e-27 126.7 106 53.8
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.1e-27 126.7 106 53.8
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 1.1e-27 126.7 72 73.6
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-27 126.7 72 73.6
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-27 126.7 72 73.6
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-27 126.7 72 73.6
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-27 126.7 72 73.6
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 1.1e-27 126.7 70 75.7
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.1e-27 126.7 106 53.8
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 1.1e-27 126.7 69 73.9
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.1e-27 126.7 92 60.9
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.1e-27 126.7 69 75.4
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.4e-27 126.3 69 73.9
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.8e-27 125.9 72 75.0
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 1.8e-27 125.9 70 74.3
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.8e-27 125.9 69 75.4
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 2.4e-27 125.6 72 72.2
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 2.4e-27 125.6 72 72.2
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 2.4e-27 125.6 72 75.0
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 2.4e-27 125.6 72 75.0
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 2.4e-27 125.6 72 75.0
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.4e-27 125.6 72 75.0
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 3.1e-27 125.2 72 72.2
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 3.1e-27 125.2 92 59.8
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 4.0e-27 124.8 106 52.8
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 4.0e-27 124.8 97 60.8
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 5.3e-27 124.4 72 72.2
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.3e-27 124.4 72 72.2
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 6.9e-27 124.0 97 60.8
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 9.0e-27 123.6 100 59.0
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 9.0e-27 123.6 92 60.9
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 9.0e-27 123.6 92 60.9
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 9.0e-27 123.6 72 73.6
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 2.6e-26 122.1 92 57.6
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 3.4e-26 121.7 101 54.5
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 3.4e-26 121.7 101 54.5
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 4.5e-26 121.3 75 70.7
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 5.8e-26 120.9 69 71.0
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 9.9e-26 120.2 72 68.1
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 9.9e-26 120.2 72 68.1
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 2.2e-25 119.0 72 66.7
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 6.4e-25 117.5 72 65.3
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 8.4e-25 117.1 72 65.3
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 8.4e-25 117.1 72 65.3
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 8.4e-25 117.1 72 65.3
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.4e-24 116.3 69 66.7
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.4e-24 115.5 135 45.9
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 7.1e-24 114.0 72 62.5
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 7.1e-24 114.0 72 63.9
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 9.3e-24 113.6 96 53.1
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 1.2e-23 113.2 69 66.7
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.6e-23 112.8 69 68.1
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.0e-22 110.2 69 66.7
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 3.9e-22 108.2 69 68.1
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 7.4e-21 104.0 69 69.6
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 3.1e-19 98.6 69 56.5
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 1.1e-16 90.1 47 76.6
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 9.3e-16 87.0 54 70.4
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 1.2e-15 86.7 47 74.5
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 4.6e-15 84.7 55 65.5
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 4.6e-15 84.7 45 75.6
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 6.0e-15 84.3 45 75.6
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 7.9e-15 84.0 69 50.7
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 3.0e-14 82.0 42 78.6
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.1e-11 73.6 38 78.9
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 2.4e-11 72.4 69 40.6
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 1.8e-06 56.2 28 78.6
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 3.0e-06 55.5 25 88.0
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 3.9e-06 55.1 34 70.6
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 8.7e-06 53.9 28 78.6


User provided reference genes

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