Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 7.8e-103 377.1 186 100.0
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 1.3e-92 343.2 185 90.3
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.9e-85 319.3 187 82.9
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 5.6e-85 317.8 180 83.9
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 1.6e-84 316.2 185 83.2
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.0e-82 309.3 177 84.2
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 2.9e-81 305.4 172 82.6
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.1e-80 303.5 179 82.1
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 4.2e-80 301.6 177 81.4
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 4.2e-80 301.6 178 83.1
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 9.3e-80 300.4 177 81.9
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 2.1e-79 299.3 172 82.6
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 7.9e-79 297.4 177 79.1
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 2.3e-78 295.8 177 78.5
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.3e-78 295.8 180 77.8
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.9e-78 295.0 179 78.8
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 5.1e-78 294.7 177 79.7
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 5.1e-78 294.7 176 81.2
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.1e-77 293.5 177 80.2
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.1e-77 293.5 177 78.5
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.9e-77 292.7 174 79.3
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 2.5e-77 292.4 177 78.0
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 4.3e-77 291.6 178 78.7
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.6e-77 291.2 177 78.0
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 7.4e-77 290.8 180 77.2
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 9.6e-77 290.4 177 76.3
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 9.6e-77 290.4 177 78.5
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 1.3e-76 290.0 177 79.7
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.6e-76 289.7 174 77.6
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.6e-76 289.7 185 73.5
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 2.1e-76 289.3 184 76.1
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 4.8e-76 288.1 184 78.3
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 8.2e-76 287.3 186 72.6
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 8.2e-76 287.3 178 77.5
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 1.1e-75 287.0 178 77.5
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 3.1e-75 285.4 177 76.8
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 3.1e-75 285.4 176 77.8
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 5.3e-75 284.6 177 74.6
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.2e-74 283.5 186 75.3
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.2e-74 283.5 179 76.0
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.2e-74 283.5 175 74.9
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.2e-74 283.5 175 74.9
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 2.0e-74 282.7 180 74.4
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 2.2e-73 279.3 179 74.9
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.2e-73 279.3 176 76.1
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 4.9e-73 278.1 174 75.9
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.9e-72 276.2 177 74.0
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 4.2e-72 275.0 168 76.2
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 4.2e-72 275.0 178 73.6
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 5.5e-72 274.6 181 74.6
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 5.5e-72 274.6 197 69.0
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 7.1e-72 274.2 191 71.2
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 2.1e-71 272.7 177 72.3
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 2.7e-71 272.3 177 71.8
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.0e-70 270.4 160 78.8
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.3e-70 270.0 180 73.9
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 5.1e-70 268.1 177 71.2
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 6.7e-70 267.7 181 70.2
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 8.7e-70 267.3 177 72.9
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 1.5e-69 266.5 160 79.4
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.5e-69 266.5 245 57.6
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.5e-69 266.5 226 60.6
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.3e-69 265.0 177 70.1
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 5.7e-69 264.6 181 69.1
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 5.7e-69 264.6 176 71.0
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 1.3e-68 263.5 176 72.2
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.3e-68 263.5 185 68.6
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.2e-68 262.7 176 72.2
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 4.8e-68 261.5 176 71.6
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 6.3e-68 261.2 176 69.3
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 6.3e-68 261.2 179 70.4
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.1e-67 260.4 167 74.9
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.8e-67 259.6 178 70.8
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 9.0e-67 257.3 177 69.5
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 9.0e-67 257.3 185 66.5
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 9.0e-67 257.3 166 75.3
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 2.6e-66 255.8 181 69.1
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 3.4e-66 255.4 182 68.7
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 3.4e-66 255.4 157 77.7
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 3.4e-66 255.4 145 80.7
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 5.9e-66 254.6 177 66.1
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 1.7e-65 253.1 174 69.5
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.7e-65 253.1 178 68.0
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 2.2e-65 252.7 177 68.9
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 2.2e-65 252.7 164 71.3
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 3.8e-65 251.9 186 65.1
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 5.0e-65 251.5 183 69.9
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 6.5e-65 251.1 182 68.7
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.4e-64 250.0 177 67.8
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.2e-64 248.8 170 67.6
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.2e-64 248.8 150 73.3
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 3.2e-64 248.8 160 71.9
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 5.5e-64 248.1 179 67.6
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 7.2e-64 247.7 177 66.1
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 1.2e-63 246.9 178 67.4
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.6e-63 246.5 157 72.6
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 3.6e-63 245.4 169 71.6
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 3.6e-63 245.4 161 70.8
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 3.6e-63 245.4 177 67.8
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 3.6e-63 245.4 179 64.8
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 4.6e-63 245.0 170 68.2
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 6.1e-63 244.6 148 76.4
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 1.0e-62 243.8 160 70.6
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.4e-62 243.4 177 65.0
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 2.3e-62 242.7 177 66.1
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 1.1e-61 240.4 178 66.3
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.1e-61 240.4 177 62.7
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 1.1e-61 240.4 167 67.1
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.5e-61 240.0 157 71.3
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 2.5e-61 239.2 147 73.5
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 2.2e-60 236.1 146 72.6
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 6.3e-60 234.6 155 69.0
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 8.2e-60 234.2 176 65.3
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 8.2e-60 234.2 176 63.1
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.8e-59 233.0 164 70.1
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 2.4e-59 232.6 171 64.3
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 1.2e-58 230.3 169 65.7
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 2.6e-58 229.2 156 67.9
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 3.4e-58 228.8 150 69.3
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.7e-57 226.5 157 66.2
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 2.9e-57 225.7 158 67.1
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 6.5e-57 224.6 169 63.9
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 8.5e-57 224.2 163 64.4
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 5.5e-56 221.5 158 65.8
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 3.6e-55 218.8 158 65.2
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 3.6e-55 218.8 141 73.8
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 6.1e-55 218.0 158 65.2
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 6.1e-55 218.0 158 65.2
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 1.0e-54 217.2 162 61.7
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.8e-54 216.5 176 59.1
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.9e-54 215.3 144 71.5
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.6e-53 212.6 144 70.1
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.7e-52 209.9 125 76.8
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 7.0e-51 204.5 153 66.0
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.3e-49 200.3 173 61.8
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 1.3e-49 200.3 115 80.9
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 2.9e-49 199.1 162 59.9
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 3.8e-49 198.7 195 50.3
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 5.0e-49 198.4 195 49.7
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 1.4e-48 196.8 142 68.3
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.0e-46 189.1 121 71.1
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 2.0e-45 186.4 141 62.4
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.6e-42 176.8 171 49.1
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.7e-42 174.5 97 82.5
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.7e-41 173.3 96 83.3
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 5.0e-41 171.8 146 55.5
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 1.1e-40 170.6 111 72.1
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 4.2e-40 168.7 173 51.4
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.3e-38 162.9 117 63.2
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 6.7e-38 161.4 131 57.3
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 2.0e-37 159.8 148 53.4
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 4.4e-37 158.7 160 52.5
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 1.3e-36 157.1 149 51.7
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.4e-35 153.7 195 43.1
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 1.6e-34 150.2 264 36.0
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.7e-33 146.7 149 53.7
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.5e-29 131.3 75 81.3
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.8e-29 131.0 75 80.0
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 4.5e-26 122.1 172 40.1
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 7.7e-26 121.3 91 62.6
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 7.7e-26 121.3 90 57.8
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 1.0e-25 120.9 70 78.6
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 8.6e-25 117.9 143 41.3
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 3.3e-24 115.9 60 81.7
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 2.0e-21 106.7 233 30.0
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 5.8e-13 78.6 51 78.4
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 1.9e-11 73.6 39 82.1
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 1.2e-10 70.9 45 75.6
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 2.7e-10 69.7 49 69.4


User provided reference genes

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