Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 8.8e-299 1029.6 561 100.0
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.6e-276 955.7 561 87.2
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 1.3e-273 946.0 557 90.7
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 6.3e-273 943.7 561 84.5
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 2.4e-272 941.8 561 85.2
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 2.4e-272 941.8 561 85.2
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 4.1e-264 914.4 612 82.4
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 8.6e-262 906.7 562 85.2
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 3.3e-261 904.8 561 81.6
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 3.3e-261 904.8 542 89.5
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 9.5e-261 903.3 562 81.0
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 4.4e-258 894.4 562 80.8
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 9.8e-258 893.3 562 83.6
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 1.7e-257 892.5 560 80.7
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 4.9e-257 891.0 561 80.4
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.4e-256 889.4 562 80.8
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 1.4e-256 889.4 561 81.8
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 3.2e-256 888.3 562 80.1
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 9.2e-256 886.7 562 81.3
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 2.0e-255 885.6 563 81.0
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 4.6e-255 884.4 600 76.0
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 7.8e-255 883.6 561 80.6
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 7.8e-255 883.6 561 80.4
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 2.5e-253 878.6 562 78.6
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 5.6e-253 877.5 561 79.9
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 2.1e-252 875.5 561 80.4
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 4.7e-252 874.4 562 80.4
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 6.2e-252 874.0 565 82.8
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 8.9e-251 870.2 561 81.3
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 5.8e-250 867.5 561 78.4
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 3.7e-249 864.8 561 79.3
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 6.4e-249 864.0 560 83.6
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 6.4e-249 864.0 561 82.9
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 8.3e-249 863.6 566 82.7
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 4.1e-248 861.3 626 72.5
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 4.1e-248 861.3 561 78.4
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 4.1e-248 861.3 561 78.6
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 5.4e-248 860.9 561 79.7
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 1.2e-247 859.8 561 78.6
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 6.0e-247 857.4 575 77.9
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.3e-246 856.3 562 78.5
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 1.7e-246 855.9 561 77.7
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 3.9e-246 854.7 561 78.8
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 3.9e-246 854.7 561 78.6
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 3.9e-246 854.7 562 78.3
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 5.0e-246 854.4 561 77.9
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 2.5e-245 852.0 562 78.5
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 3.6e-244 848.2 562 79.0
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 1.4e-243 846.3 561 78.6
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 2.3e-243 845.5 561 77.7
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 2.2e-241 839.0 562 77.2
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 6.6e-238 827.4 515 81.4
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 7.3e-237 823.9 561 76.1
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 7.3e-237 823.9 562 76.5
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 1.6e-236 822.8 539 77.4
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.8e-236 822.0 565 76.5
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 8.1e-236 820.5 561 74.9
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 8.1e-236 820.5 561 74.9
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 2.3e-235 818.9 562 78.6
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 5.2e-235 817.8 557 76.7
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 3.4e-234 815.1 562 74.4
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 7.6e-234 813.9 576 76.7
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 2.2e-233 812.4 561 78.4
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 2.9e-233 812.0 562 78.5
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.7e-233 811.6 560 76.2
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 1.1e-232 810.1 562 74.4
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 1.9e-229 799.3 514 78.6
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 4.0e-227 791.6 532 79.7
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.5e-226 789.6 546 76.6
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 1.6e-223 779.6 513 77.4
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 2.7e-223 778.9 655 65.0
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 9.6e-221 770.4 562 72.6
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 9.6e-221 770.4 561 70.4
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 2.1e-220 769.2 562 72.1
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 4.8e-220 768.1 562 71.7
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 1.1e-219 766.9 562 71.7
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 6.9e-219 764.2 562 68.5
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 9.9e-218 760.4 563 71.4
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 9.9e-218 760.4 563 71.4
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 3.8e-217 758.4 544 72.6
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 2.4e-216 755.7 562 70.3
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 5.4e-216 754.6 576 69.1
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.6e-215 753.1 562 70.6
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 1.7e-214 749.6 594 68.9
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 3.9e-214 748.4 563 70.5
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.9e-214 748.4 562 70.5
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 5.6e-213 744.6 562 71.0
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 7.4e-213 744.2 533 72.6
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 8.1e-212 740.7 512 74.4
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 2.1e-196 689.5 476 74.4
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 4.5e-186 655.2 393 85.0
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 3.4e-178 629.0 455 70.3
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 4.5e-170 602.1 434 70.3
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 2.9e-169 599.4 569 59.4
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 1.2e-167 594.0 563 55.6
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 1.1e-163 580.9 562 54.4
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.0e-161 574.3 554 58.1
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 6.3e-156 555.1 563 52.8
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 8.0e-151 538.1 382 72.8
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 9.8e-149 531.2 566 49.5
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 9.2e-147 524.6 339 82.6
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 2.2e-140 503.4 340 74.4
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 2.9e-132 476.5 524 55.3
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 1.1e-126 458.0 306 79.7
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 4.0e-126 456.1 356 62.9
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 1.9e-123 447.2 349 68.2
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 4.3e-112 409.5 260 76.5
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 5.1e-81 306.2 198 79.3
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 2.5e-80 303.9 542 37.3
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 1.6e-79 301.2 208 89.4
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 1.9e-67 261.2 144 84.7
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 5.5e-67 259.6 191 85.3
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.0e-61 241.1 130 91.5
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.0e-60 238.8 174 64.4
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 1.9e-51 208.0 161 68.3
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.5e-35 155.2 90 76.7
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 2.5e-35 154.5 180 52.2
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 8.0e-34 149.4 178 51.1
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.3e-33 147.9 90 80.0
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 1.2e-32 145.6 157 55.4
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 1.2e-32 145.6 157 55.4
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 5.4e-30 136.7 131 58.8
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 9.2e-30 136.0 129 60.5
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 6.6e-28 129.8 167 49.7
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 5.8e-24 116.7 77 71.4
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 1.4e-22 112.1 58 93.1
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 3.0e-20 104.4 87 66.7
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 9.5e-19 99.4 90 61.1
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 9.8e-16 89.4 81 59.3
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 1.8e-09 68.6 162 24.1
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 8.9e-09 66.2 160 25.6
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 9.9e-08 62.8 172 23.3
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.2e-07 61.6 47 53.2
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 8.3e-07 59.7 160 21.9
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 1.1e-06 59.3 162 23.5
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 3.2e-06 57.8 161 22.4
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 7.1e-06 56.6 162 22.2


User provided reference genes

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