Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1766.1 869 100.0
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1504.2 850 87.6
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1464.5 855 84.7
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1352.8 852 80.6
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1351.7 900 75.8
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1348.2 855 80.0
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1347.8 857 79.8
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1344.3 853 79.2
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1340.5 853 79.2
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1340.5 867 78.1
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1334.3 892 75.2
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1333.9 863 78.7
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1321.2 863 78.2
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1315.4 865 77.0
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1312.7 855 77.0
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1300.0 847 77.7
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1299.6 856 77.1
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1297.0 855 75.3
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1290.0 852 77.1
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1288.1 857 76.4
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1281.2 839 76.4
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1279.6 855 75.4
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1278.5 839 76.3
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1278.1 978 68.2
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1276.2 830 75.7
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1273.8 839 76.2
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1266.9 856 75.5
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1263.8 870 73.1
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1260.4 869 73.4
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1259.6 869 73.1
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1259.2 873 73.0
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1256.5 852 73.4
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1244.6 852 73.4
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1241.5 832 76.1
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1234.2 849 73.6
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1221.1 875 70.5
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1213.4 835 73.5
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1209.5 831 73.6
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1208.4 858 71.8
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1196.4 861 72.0
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1192.2 852 70.4
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1186.8 875 70.2
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1186.4 859 71.0
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1185.6 819 72.9
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1182.5 849 70.6
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1181.0 774 76.9
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1179.1 879 68.9
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1175.6 868 70.6
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1172.5 852 70.8
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1171.8 868 70.4
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1169.1 926 66.1
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1163.3 868 70.4
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 0.0e+00 1162.9 839 72.8
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 0.0e+00 1160.2 854 69.4
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1159.1 853 69.8
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1153.7 851 69.9
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1149.8 840 69.9
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 0.0e+00 1139.4 859 68.3
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1138.6 824 71.2
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1137.1 855 69.5
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1132.5 852 68.7
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 0.0e+00 1119.0 833 69.3
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1113.2 856 68.0
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 0.0e+00 1111.7 786 71.4
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1108.6 859 68.2
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1102.8 869 66.9
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 0.0e+00 1099.0 837 67.9
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1085.9 825 67.6
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 0.0e+00 1080.5 928 62.7
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 0.0e+00 1078.5 857 66.3
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 0.0e+00 1078.5 849 66.8
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1075.5 847 66.4
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 1.4e-308 1062.8 853 65.5
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 1.8e-303 1045.8 830 65.3
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 1.2e-302 1043.1 846 64.9
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 1.7e-293 1012.7 849 63.1
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 1.5e-284 983.0 782 65.5
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 4.5e-278 961.4 830 61.0
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 2.9e-277 958.7 830 60.5
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 6.6e-277 957.6 830 60.7
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 3.3e-276 955.3 830 60.2
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 1.7e-272 943.0 830 59.8
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.7e-272 941.8 833 59.9
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 5.9e-270 934.5 842 59.6
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 3.9e-269 931.8 830 59.6
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 3.9e-269 931.8 830 59.6
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 9.5e-268 927.2 840 59.4
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 1.4e-266 923.3 830 60.1
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.4e-266 923.3 830 59.9
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 7.8e-262 907.5 829 58.6
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 3.3e-260 902.1 826 59.4
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 7.5e-257 891.0 822 58.4
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 7.8e-246 854.4 828 56.6
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 6.8e-242 841.3 768 61.3
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 4.3e-236 822.0 729 61.6
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 9.3e-231 804.3 768 57.3
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 5.8e-225 785.0 528 76.5
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 4.2e-223 778.9 863 53.7
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.1e-191 674.5 373 87.1
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 6.7e-189 665.2 428 78.0
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 1.3e-187 661.0 473 74.0
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 4.1e-186 656.0 883 44.2
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 5.5e-183 645.6 595 59.5
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.6e-182 644.0 882 45.8
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 1.2e-169 601.3 344 84.9
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 4.2e-167 592.8 868 42.7
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 6.8e-165 585.5 378 79.6
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 1.3e-163 581.3 388 75.5
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 4.7e-142 509.6 512 55.1
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 5.4e-130 469.5 276 81.2
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 5.6e-103 379.8 283 72.4
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 1.9e-98 364.8 318 60.1
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 9.3e-98 362.5 548 42.3
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 9.3e-98 362.5 548 42.3
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 8.2e-94 349.4 283 61.5
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 3.7e-70 270.8 150 88.0
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.7e-65 254.6 359 44.8
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 2.0e-63 248.4 873 27.9
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.2e-59 235.0 126 87.3
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 9.1e-53 213.0 117 80.3
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.5e-50 205.7 112 86.6
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 3.6e-49 201.1 120 83.3
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 9.8e-47 193.0 205 48.3
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.3e-46 189.9 149 63.8
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 6.6e-43 180.3 196 45.4
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 6.8e-40 170.2 186 53.2
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 1.9e-29 135.6 87 78.2
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 2.3e-27 128.6 293 31.7
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 1.1e-24 119.8 129 48.1
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 1.2e-15 89.7 145 37.9
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.2e-15 89.7 57 73.7
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 4.4e-15 87.8 129 39.5
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.4e-15 87.8 55 74.5
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.4e-15 87.8 55 74.5
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.4e-15 87.8 55 74.5
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.4e-15 87.8 55 74.5
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.4e-15 87.8 55 74.5
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.4e-15 87.8 55 74.5
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.4e-15 87.8 55 74.5
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.4e-15 87.8 55 74.5
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.4e-15 87.8 55 74.5
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.4e-15 87.8 55 74.5
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.8e-15 87.4 55 74.5
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 2.2e-14 85.5 69 63.8
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 3.8e-14 84.7 230 28.7
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 1.4e-13 82.8 59 62.7
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 3.2e-13 81.6 65 64.6
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 1.7e-11 75.9 118 39.0
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.5e-10 72.8 33 93.9
HanXRQChr09g0244011 Helianthus annuus HOM05D005283 ORTHO05D006769 3.1e-08 65.1 51 62.7
VMungo1127G0889 Vigna mungo HOM05D005283 ORTHO05D006769 1.3e-06 59.7 61 50.8


User provided reference genes

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