Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 4.4e-239 830.9 413 100.0
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 1.6e-92 344.0 663 38.3
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.5e-90 337.4 674 37.5
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 2.5e-85 320.1 678 35.8
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 2.8e-84 316.6 670 36.0
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 7.6e-82 308.5 681 35.7
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 3.8e-81 306.2 681 35.2
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 2.1e-79 300.4 686 34.4
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 5.1e-78 295.8 687 35.2
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 5.6e-77 292.4 731 33.0
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 1.6e-76 290.8 685 35.2
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 8.1e-76 288.5 694 33.9
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 3.1e-75 286.6 726 34.2
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 6.9e-75 285.4 709 34.7
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 2.0e-74 283.9 688 34.2
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 2.6e-74 283.5 672 33.3
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 2.9e-73 280.0 686 34.3
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 3.2e-72 276.6 684 33.9
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 3.2e-72 276.6 684 33.9
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 4.2e-72 276.2 463 42.1
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 5.5e-72 275.8 690 33.2
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 7.1e-72 275.4 676 33.1
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 7.1e-72 275.4 662 34.4
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 4.6e-71 272.7 688 32.8
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 7.9e-71 271.9 681 33.8
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.0e-70 271.6 614 34.9
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 1.3e-70 271.2 676 34.2
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 1.1e-69 268.1 671 33.2
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 1.5e-69 267.7 592 37.0
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 1.6e-68 264.2 727 31.9
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 2.1e-68 263.8 681 33.3
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.4e-67 261.2 671 34.4
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 5.3e-67 259.2 690 33.0
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 9.0e-67 258.5 671 32.9
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 1.0e-65 255.0 690 33.0
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 1.7e-65 254.2 675 33.0
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 2.9e-65 253.4 655 33.1
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 2.9e-65 253.4 664 33.3
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 6.5e-65 252.3 656 32.6
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 8.4e-65 251.9 412 42.7
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 8.4e-65 251.9 687 33.2
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 1.4e-64 251.1 675 33.3
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 7.1e-64 248.8 669 32.4
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 7.1e-64 248.8 697 32.4
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 2.1e-63 247.3 688 30.8
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 2.7e-63 246.9 674 32.6
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 2.7e-63 246.9 678 31.4
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.7e-63 246.9 683 32.9
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 3.5e-63 246.5 675 33.2
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 6.0e-63 245.7 679 31.4
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 7.9e-63 245.4 683 32.1
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 1.8e-62 244.2 669 31.8
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 5.1e-62 242.7 682 31.1
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 8.7e-62 241.9 682 31.8
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 1.1e-61 241.5 665 31.6
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 1.5e-61 241.1 839 28.2
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.5e-61 241.1 676 31.8
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 1.9e-61 240.7 674 31.2
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 5.7e-61 239.2 683 31.2
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 5.7e-61 239.2 681 31.6
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 9.6e-61 238.4 681 31.0
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.3e-60 238.0 679 30.8
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 1.6e-60 237.7 683 30.9
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.7e-60 236.5 686 32.9
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 3.7e-60 236.5 672 31.8
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 4.8e-60 236.1 675 31.0
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 6.3e-60 235.7 697 31.6
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 1.4e-59 234.6 676 30.6
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 1.4e-59 234.6 675 31.7
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 1.8e-59 234.2 678 30.1
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.4e-59 233.8 641 32.4
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.4e-59 233.8 675 30.4
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 4.1e-59 233.0 680 30.4
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 6.9e-59 232.3 676 30.8
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 1.2e-58 231.5 673 31.4
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 1.2e-58 231.5 664 30.7
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 3.4e-58 229.9 589 32.8
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 1.3e-57 228.0 645 31.3
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 1.7e-57 227.6 675 30.7
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 1.7e-57 227.6 684 31.3
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 2.2e-57 227.3 603 33.2
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 3.8e-57 226.5 674 30.9
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 1.2e-55 221.5 666 30.8
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 1.6e-55 221.1 652 30.4
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 1.6e-55 221.1 700 30.1
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 6.7e-54 215.7 654 30.3
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 5.7e-53 212.6 672 29.3
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 9.7e-53 211.8 496 34.7
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 6.3e-52 209.1 624 31.4
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 8.2e-52 208.8 672 30.4
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 8.2e-52 208.8 668 29.9
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 1.1e-51 208.4 660 30.2
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 3.1e-51 206.8 635 31.0
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 1.5e-50 204.5 661 29.0
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 3.4e-50 203.4 564 31.0
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 4.5e-50 203.0 242 50.0
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 1.0e-49 201.8 662 28.9
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 1.0e-49 201.8 662 28.9
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 1.0e-49 201.8 662 29.6
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 1.3e-49 201.4 649 29.4
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 1.7e-49 201.1 649 29.3
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 3.8e-49 199.9 666 29.6
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 6.5e-49 199.1 649 29.1
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 6.5e-49 199.1 658 31.0
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 8.5e-49 198.7 662 29.6
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 2.5e-48 197.2 650 29.1
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 5.5e-48 196.1 660 28.9
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 6.1e-47 192.6 658 28.9
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 1.4e-46 191.4 649 29.4
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 3.0e-46 190.3 641 29.5
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 6.3e-44 182.6 546 29.7
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 4.1e-43 179.9 582 28.4
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 4.5e-42 176.4 478 32.2
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 7.7e-42 175.6 566 29.9
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 1.1e-40 171.8 97 89.7
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 2.1e-39 167.5 562 29.2
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 1.8e-38 164.5 611 26.8
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 5.2e-38 162.9 589 27.3
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 3.7e-36 156.8 227 45.4
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 4.8e-36 156.4 634 28.1
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 5.3e-35 152.9 102 79.4
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 4.5e-34 149.8 190 45.8
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 3.8e-33 146.7 206 42.7
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 3.8e-33 146.7 767 25.6
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 2.8e-28 130.6 525 26.5
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 1.8e-27 127.9 120 53.3
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 1.6e-26 124.8 110 56.4
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 2.2e-25 120.9 193 40.9
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 8.0e-23 112.5 87 71.3
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.2e-21 108.6 110 57.3
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 4.1e-19 100.1 195 34.9
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 4.5e-18 96.7 111 45.9
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 1.6e-15 88.2 80 62.5
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 2.0e-13 81.3 98 46.9
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 2.2e-12 77.8 89 44.9
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 3.5e-10 70.5 85 49.4
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 3.5e-10 70.5 88 44.3
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 3.6e-07 60.5 65 58.5
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 4.7e-07 60.1 131 34.4


User provided reference genes

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