Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 1.6e-77 293.5 269 100.0
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 3.1e-68 262.7 150 92.0
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 3.1e-68 262.7 155 89.0
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 1.2e-67 260.8 156 88.5
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.6e-67 259.6 155 87.7
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 4.5e-67 258.8 155 87.7
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 4.5e-67 258.8 151 91.4
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 4.5e-67 258.8 155 87.7
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.9e-67 258.5 155 87.1
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 7.7e-67 258.1 156 85.9
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 7.7e-67 258.1 156 87.8
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 2.9e-66 256.1 150 90.0
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 8.5e-66 254.6 155 87.1
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 8.5e-66 254.6 155 87.1
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.4e-65 253.8 153 86.9
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 3.2e-65 252.7 156 87.8
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 1.6e-64 250.4 151 89.4
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 2.7e-64 249.6 155 85.8
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 3.6e-64 249.2 154 84.4
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 7.9e-64 248.1 153 85.6
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 7.9e-64 248.1 156 83.3
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 3.9e-63 245.7 152 90.1
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 5.1e-63 245.4 154 85.1
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 8.8e-63 244.6 153 85.6
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 2.0e-62 243.4 154 83.1
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 2.6e-62 243.0 155 84.5
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 3.7e-61 239.2 148 87.2
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 4.8e-61 238.8 153 86.3
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 4.8e-61 238.8 153 84.3
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.1e-60 237.7 154 83.8
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 1.1e-60 237.7 151 83.4
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.4e-60 237.3 154 83.1
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 1.8e-60 236.9 148 85.8
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.8e-60 236.9 154 81.8
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 2.4e-60 236.5 154 84.4
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.4e-60 236.5 154 84.4
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.4e-60 236.5 151 84.8
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 4.1e-60 235.7 154 83.8
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 5.3e-60 235.3 154 83.1
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 9.1e-60 234.6 149 85.2
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 1.2e-59 234.2 155 82.6
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.5e-59 233.8 148 85.8
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 1.5e-59 233.8 150 83.3
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 4.5e-59 232.3 149 83.9
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 5.9e-59 231.9 154 81.8
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 5.9e-59 231.9 150 86.0
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 5.9e-59 231.9 154 83.8
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 1.3e-58 230.7 148 86.5
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 1.7e-58 230.3 149 83.2
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 1.7e-58 230.3 155 80.6
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 2.9e-58 229.6 152 81.6
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 3.8e-58 229.2 153 81.7
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 5.0e-58 228.8 153 81.0
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 5.0e-58 228.8 153 83.0
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 5.0e-58 228.8 152 81.6
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 5.0e-58 228.8 152 81.6
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 6.5e-58 228.4 151 83.4
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 1.1e-57 227.6 154 83.1
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 1.1e-57 227.6 151 81.5
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.4e-57 227.3 144 84.0
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.4e-57 227.3 145 86.9
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.5e-57 226.5 146 86.3
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 3.2e-57 226.1 153 81.7
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 3.2e-57 226.1 150 81.3
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 4.2e-57 225.7 151 82.1
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 4.2e-57 225.7 148 81.1
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 5.5e-57 225.3 150 80.7
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 5.5e-57 225.3 149 83.9
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 7.2e-57 224.9 155 78.1
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 7.2e-57 224.9 155 78.1
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 7.2e-57 224.9 143 83.9
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 9.4e-57 224.6 148 83.1
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 9.4e-57 224.6 151 76.8
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 1.2e-56 224.2 142 83.8
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 1.6e-56 223.8 149 81.2
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 1.6e-56 223.8 148 81.1
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 2.7e-56 223.0 154 80.5
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.7e-56 223.0 144 86.8
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 7.9e-56 221.5 153 79.7
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 7.9e-56 221.5 142 81.7
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 7.9e-56 221.5 144 82.6
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 1.4e-55 220.7 145 82.1
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 1.8e-55 220.3 152 78.3
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 3.9e-55 219.2 157 78.3
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 5.2e-55 218.8 145 82.1
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 5.2e-55 218.8 145 82.1
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 8.8e-55 218.0 148 79.7
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 8.8e-55 218.0 153 77.8
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 8.8e-55 218.0 144 80.6
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.5e-54 217.2 154 77.9
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.5e-54 217.2 155 79.4
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 2.6e-54 216.5 144 81.2
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 2.6e-54 216.5 144 81.2
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 5.7e-54 215.3 157 78.3
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 5.7e-54 215.3 157 77.7
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 1.3e-53 214.2 153 78.4
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 6.3e-53 211.8 132 84.8
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 1.1e-52 211.1 155 76.8
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 1.4e-52 210.7 157 75.8
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 2.4e-52 209.9 133 85.7
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 2.4e-52 209.9 145 82.1
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 2.4e-52 209.9 147 81.0
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 2.4e-52 209.9 147 81.0
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 5.3e-52 208.8 151 77.5
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 5.3e-52 208.8 151 77.5
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 7.0e-52 208.4 134 85.8
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 9.1e-52 208.0 153 76.5
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 1.2e-51 207.6 133 85.7
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 2.6e-51 206.5 148 79.1
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 2.6e-51 206.5 138 83.3
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 2.6e-51 206.5 135 82.2
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 2.6e-51 206.5 132 85.6
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 4.5e-51 205.7 153 75.8
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 4.5e-51 205.7 153 75.8
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 7.7e-51 204.9 148 77.7
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 7.7e-51 204.9 150 78.7
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 1.0e-50 204.5 148 77.7
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 1.3e-50 204.1 148 78.4
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 2.2e-50 203.4 151 78.1
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 2.2e-50 203.4 151 78.1
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 2.2e-50 203.4 151 78.1
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 8.5e-50 201.4 144 80.6
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 1.9e-49 200.3 137 75.9
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 3.2e-49 199.5 137 75.9
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 4.7e-48 195.7 130 82.3
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 4.0e-47 192.6 140 75.7
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 5.2e-47 192.2 135 79.3
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 6.7e-47 191.8 156 71.2
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 8.8e-47 191.4 144 79.2
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.3e-46 189.5 116 87.1
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 9.7e-46 188.0 138 76.1
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 3.7e-45 186.0 159 68.6
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 2.0e-43 180.3 154 70.8
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 2.0e-43 180.3 126 73.8
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 4.7e-40 169.1 136 67.6
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 6.8e-39 165.2 135 65.9
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 5.4e-36 155.6 122 73.8
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 4.5e-35 152.5 154 63.6
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 1.2e-32 144.4 135 63.0
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 5.2e-31 139.0 127 60.6
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 6.8e-31 138.7 155 59.4
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 3.4e-30 136.3 118 61.9
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 1.7e-29 134.0 99 71.7
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 1.6e-27 127.5 87 87.4
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 2.9e-26 123.2 141 53.2
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.9e-26 123.2 99 66.7
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 1.1e-25 121.3 141 51.8
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.4e-23 114.4 79 65.8
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 6.8e-23 112.1 137 54.0
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 7.5e-22 108.6 91 73.6
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 7.5e-22 108.6 91 73.6
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 2.0e-19 100.5 83 68.7
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 1.3e-18 97.8 75 73.3
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.0e-14 84.0 66 84.8
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.2e-13 80.5 64 81.2
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 2.2e-13 80.5 46 87.0
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 8.9e-07 58.5 60 45.0


User provided reference genes

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