Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44263 Davidia involucrata HOM05D007634 ORTHO05D004310 5.2e-79 298.1 210 100.0
Dinv15141 Davidia involucrata HOM05D007634 ORTHO05D004310 2.6e-38 162.9 184 79.3
Lj6A693T64 Lonicera japonica HOM05D007634 ORTHO05D004310 1.0e-26 124.4 184 57.1
Lj3A834G63 Lonicera japonica HOM05D007634 ORTHO05D004310 5.7e-25 118.6 197 52.3
TAR636G1196 Trochodendron aralioides HOM05D007634 ORTHO05D004310 4.1e-23 112.5 190 63.7
CSS0049682 Camellia sinensis var. sinensis HOM05D007634 ORTHO05D004310 7.7e-22 108.2 183 60.1
Hma1.2p1_0078F.1_g039860 Hydrangea macrophylla HOM05D007634 ORTHO05D004310 3.2e-20 102.8 194 62.9
Hma1.2p1_1400F.1_g280910 Hydrangea macrophylla HOM05D007634 ORTHO05D004310 3.2e-20 102.8 194 62.9
Haze_01332 Corylus avellana HOM05D007634 ORTHO05D004310 4.2e-20 102.4 198 59.6
Haze_01337 Corylus avellana HOM05D007634 ORTHO05D004310 4.2e-20 102.4 198 59.6
TAR365G0785 Trochodendron aralioides HOM05D007634 ORTHO05D004310 7.2e-20 101.7 197 59.4
Rhsim02G0002500 Rhododendron simsii HOM05D032642 ORTHO05D004310 2.1e-19 100.1 186 60.2
DCAR_026994 Daucus carota HOM05D007634 ORTHO05D004310 7.9e-19 98.2 201 44.3
TAR362G0031 Trochodendron aralioides HOM05D007634 ORTHO05D004310 7.9e-19 98.2 197 59.9
MD13G1149900 Malus domestica HOM05D007634 ORTHO05D004310 3.9e-18 95.9 198 62.1
Prupe.1G113900 Prunus persica HOM05D007634 ORTHO05D004310 1.5e-17 94.0 198 59.6
Cfa015285 Carpinus fangiana HOM05D007634 ORTHO05D004310 2.5e-17 93.2 198 57.6
DCAR_023359 Daucus carota HOM05D012194 ORTHO05D015569 2.5e-17 93.2 192 52.6
CiPaw.02G072900 Carya illinoinensis HOM05D007634 ORTHO05D004310 3.7e-16 89.4 199 59.3
Potri.010G148200 Populus trichocarpa HOM05D007634 ORTHO05D004310 8.2e-16 88.2 193 60.6
Actinidia13348 Actinidia chinensis HOM05D007634 ORTHO05D004310 1.4e-15 87.4 197 57.4
Nn3g21763 Nelumbo nucifera HOM05D007634 ORTHO05D004310 1.2e-14 84.3 183 59.0
Sabra10G0114400 Salix brachista HOM05D007634 ORTHO05D004310 1.2e-14 84.3 193 60.1
Dinv10123 Davidia involucrata HOM05D009814 ORTHO05D004310 1.5e-14 84.0 200 56.5
QL06p012814 Quercus lobata HOM05D007634 ORTHO05D004310 1.5e-14 84.0 199 58.3
TWI09G0962 Tripterygium wilfordii HOM05D007634 ORTHO05D004310 1.5e-14 84.0 184 59.8
RcHm_v2.0_Chr4g0425851 Rosa chinensis HOM05D007634 ORTHO05D004310 2.0e-14 83.6 198 58.1
FAN07G0504 Fragaria x ananassa HOM05D007634 ORTHO05D004310 3.4e-14 82.8 196 58.2
TWI73G1001 Tripterygium wilfordii HOM05D007634 ORTHO05D004310 3.4e-14 82.8 197 57.4
FAN12G0129 Fragaria x ananassa HOM05D007634 ORTHO05D004310 4.5e-14 82.4 198 57.1
MD16G1150300 Malus domestica HOM05D007634 ORTHO05D004310 4.5e-14 82.4 189 60.8
vmacro15171 Vaccinium macrocarpon HOM05D018149 ORTHO05D020732 4.5e-14 82.4 104 47.1
MBI18_g35543_MAGBIO Magnolia biondii HOM05D007634 ORTHO05D004310 1.3e-13 80.9 108 45.4
CAN.G305.60 Capsicum annuum HOM05D012194 ORTHO05D015569 2.2e-13 80.1 203 52.7
FvH4_4g20190 Fragaria vesca HOM05D007634 ORTHO05D004310 3.8e-13 79.3 198 56.6
GSVIVG01028151001 Vitis vinifera HOM05D009814 ORTHO05D004310 1.1e-12 77.8 117 43.6
Nitab4.5_0004165g0050 Nicotiana tabacum HOM05D012194 ORTHO05D015569 2.5e-12 76.6 203 51.7
GSVIVG01034962001 Vitis vinifera HOM05D007634 ORTHO05D004310 2.5e-12 76.6 197 50.3
Duzib138G1730 Durio zibethinus HOM05D009814 ORTHO05D004310 4.2e-12 75.9 200 54.5
Thecc.01G317400 Theobroma cacao HOM05D009814 ORTHO05D004310 7.2e-12 75.1 200 54.0
Actinidia14250 Actinidia chinensis HOM05D003564 ORTHO05D004310 1.2e-11 74.3 189 56.1
CiPaw.07G030700 Carya illinoinensis HOM05D013055 ORTHO05D014149 1.6e-11 73.9 194 53.1
Gohir.A08G120000 Gossypium hirsutum HOM05D009814 ORTHO05D004310 1.6e-11 73.9 201 54.7
Manes.15G001900 Manihot esculenta HOM05D007634 ORTHO05D004310 1.6e-11 73.9 188 59.6
Solyc05g053360.3 Solanum lycopersicum HOM05D012194 ORTHO05D015569 1.6e-11 73.9 200 51.5
Peaxi162Scf00228g00615 Petunia axillaris HOM05D012194 ORTHO05D015569 2.1e-11 73.6 198 47.5
Nitab4.5_0000647g0240 Nicotiana tabacum HOM05D012194 ORTHO05D015569 2.7e-11 73.2 203 52.2
Potri.008G102700 Populus trichocarpa HOM05D007634 ORTHO05D004310 2.7e-11 73.2 180 58.3
Sopen05g031870 Solanum pennellii HOM05D012194 ORTHO05D015569 2.7e-11 73.2 200 51.5
Sabra08G0077600 Salix brachista HOM05D007634 ORTHO05D004310 4.7e-11 72.4 185 55.1
Aqoxy5G02697 Aquilegia oxysepala HOM05D009154 ORTHO05D004310 1.8e-10 70.5 201 32.3
Ciclev10005745m.g Citrus clementina HOM05D007634 ORTHO05D004310 1.8e-10 70.5 211 55.5
Manes.03G206900 Manihot esculenta HOM05D007634 ORTHO05D004310 3.9e-10 69.3 185 57.3
PGSC0003DMG400027207 Solanum tuberosum HOM05D012194 ORTHO05D015569 3.9e-10 69.3 200 50.5
Gorai.004G145000 Gossypium raimondii HOM05D009814 ORTHO05D004310 8.8e-10 68.2 201 53.7
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 2.6e-09 66.6 198 53.5
Haze_04036 Corylus avellana HOM05D013055 ORTHO05D014149 3.3e-09 66.2 196 48.5
CANSAT78G1884 Cannabis sativa HOM05D007634 ORTHO05D004310 5.7e-09 65.5 200 58.5
Gohir.D08G141000 Gossypium hirsutum HOM05D009814 ORTHO05D004310 5.7e-09 65.5 201 53.2
Cfa006724 Carpinus fangiana HOM05D013055 ORTHO05D014149 9.7e-09 64.7 185 55.1
Ciclev10021807m.g Citrus clementina HOM05D009814 ORTHO05D004310 9.7e-09 64.7 199 49.7
COL.COLO4_23198 Corchorus olitorius HOM05D009814 ORTHO05D004310 2.8e-08 63.2 200 51.0
Lj1C14T15 Lonicera japonica HOM05D009154 ORTHO05D004310 3.7e-08 62.8 204 30.4
COL.COLO4_34582 Corchorus olitorius HOM05D007634 ORTHO05D004310 4.8e-08 62.4 188 55.3
Actinidia25864 Actinidia chinensis HOM05D009814 ORTHO05D004310 8.2e-08 61.6 116 37.1
Aqoxy6G01340 Aquilegia oxysepala HOM05D009814 ORTHO05D004310 8.2e-08 61.6 107 38.3
CSS0041924 Camellia sinensis var. sinensis HOM05D015885 ORTHO05D012930 8.2e-08 61.6 185 45.4
Nn4g25534 Nelumbo nucifera HOM05D009814 ORTHO05D004310 8.2e-08 61.6 197 54.3
CiPaw.01G136100 Carya illinoinensis HOM05D007634 ORTHO05D004310 1.4e-07 60.8 199 52.3
Actinidia16871 Actinidia chinensis HOM05D013055 ORTHO05D012930 1.8e-07 60.5 184 57.6
Hma1.2p1_0408F.1_g146500 Hydrangea macrophylla HOM05D009814 ORTHO05D004310 1.8e-07 60.5 202 52.0
Duzib212G0210 Durio zibethinus HOM05D007634 ORTHO05D004310 4.1e-07 59.3 185 55.1
Duzib211G0633 Durio zibethinus HOM05D009814 ORTHO05D004310 5.3e-07 58.9 186 47.3
ATR0693G086 Amborella trichopoda HOM05D007634 ORTHO05D004310 7.0e-07 58.5 181 44.8
QL12p018988 Quercus lobata HOM05D009154 ORTHO05D004310 7.0e-07 58.5 189 33.9
Cpa.g.sc18.87 Carica papaya HOM05D009814 ORTHO05D004310 1.2e-06 57.8 109 33.0
DCAR_030455 Daucus carota HOM05D009154 ORTHO05D004310 1.2e-06 57.8 102 37.3
Atru.chr4.3053 Acer truncatum HOM05D007634 ORTHO05D004310 1.5e-06 57.4 151 62.3
Cpa.g.sc9.28 Carica papaya HOM05D007634 ORTHO05D004310 2.6e-06 56.6 185 56.8


User provided reference genes

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