Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 0.0e+00 1456.4 771 100.0
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 6.5e-252 874.4 741 67.7
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.2e-173 614.4 796 50.1
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 5.3e-129 466.1 600 48.5
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 1.7e-127 461.1 649 46.8
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 6.3e-122 442.6 419 59.9
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 2.2e-119 434.1 505 53.1
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 3.9e-116 423.3 675 44.0
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 2.8e-114 417.2 520 50.6
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 1.8e-113 414.5 820 39.5
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 4.1e-113 413.3 534 49.6
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 2.0e-112 411.0 823 40.2
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 3.5e-112 410.2 844 40.2
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 1.3e-111 408.3 503 50.5
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.9e-110 404.4 820 40.4
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 2.5e-110 404.1 317 69.7
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 3.2e-110 403.7 879 37.8
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 4.0e-108 396.7 484 50.6
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.3e-107 393.7 852 38.1
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 7.0e-105 386.0 831 39.4
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 1.2e-104 385.2 471 51.0
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.6e-104 384.8 671 41.1
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 7.7e-104 382.5 671 41.1
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.3e-103 381.7 666 42.0
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 2.2e-103 380.9 383 58.2
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.5e-102 378.3 465 50.1
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 8.0e-101 372.5 975 34.2
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 6.8e-100 369.4 566 45.1
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 1.2e-99 368.6 378 55.6
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 7.5e-99 365.9 543 46.2
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 7.5e-99 365.9 548 46.2
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.3e-98 365.2 540 45.7
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 1.3e-98 365.2 331 64.0
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.8e-97 361.3 495 47.5
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 4.5e-96 356.7 589 44.1
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 3.6e-93 347.1 471 49.5
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 6.1e-93 346.3 341 56.6
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 1.0e-87 328.9 300 62.3
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 1.7e-87 328.2 707 36.4
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 8.6e-87 325.9 523 44.2
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.9e-86 324.7 296 61.8
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 2.8e-85 320.9 490 46.1
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 5.2e-84 316.6 492 45.9
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 1.2e-83 315.5 624 38.0
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 1.5e-83 315.1 466 44.6
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 2.0e-83 314.7 470 45.7
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 2.0e-83 314.7 470 45.7
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 2.0e-83 314.7 470 45.7
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 5.8e-83 313.2 423 47.8
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 1.7e-82 311.6 371 52.3
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 2.2e-82 311.2 354 51.7
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 2.4e-81 307.8 451 45.2
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 5.4e-81 306.6 542 41.0
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 7.0e-81 306.2 486 44.9
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 3.5e-80 303.9 464 44.8
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.7e-79 301.6 324 55.6
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.0e-79 300.8 452 45.4
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 3.9e-79 300.4 499 43.7
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 6.6e-79 299.7 736 36.1
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 6.6e-79 299.7 358 51.1
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 6.6e-79 299.7 484 43.6
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 1.5e-78 298.5 400 46.5
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 2.5e-78 297.7 467 45.2
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 4.7e-77 293.5 562 38.6
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 8.0e-77 292.7 485 42.3
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 4.4e-75 287.0 714 35.2
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 7.5e-75 286.2 454 43.6
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 4.9e-74 283.5 301 55.5
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 8.3e-74 282.7 530 38.3
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 7.8e-72 276.2 408 45.8
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 3.0e-71 274.2 396 46.2
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 5.1e-71 273.5 472 42.2
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 5.6e-70 270.0 249 61.0
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 9.5e-70 269.2 628 35.5
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 2.1e-69 268.1 310 52.6
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 2.3e-68 264.6 370 47.3
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 4.0e-68 263.8 679 35.2
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 1.7e-66 258.5 249 59.8
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.2e-64 252.3 358 43.3
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 2.1e-64 251.5 729 33.6
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 5.1e-63 246.9 368 43.5
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 1.1e-62 245.7 221 61.5
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 1.1e-62 245.7 373 40.5
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 2.1e-61 241.5 289 47.1
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 3.6e-61 240.7 323 47.1
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.8e-60 238.4 533 36.4
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 1.4e-57 228.8 329 44.7
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 3.0e-55 221.1 734 30.9
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 5.6e-54 216.9 366 40.2
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 5.6e-54 216.9 478 36.4
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 5.6e-54 216.9 305 43.6
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 9.6e-54 216.1 289 45.0
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 9.6e-54 216.1 472 36.2
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 3.6e-53 214.2 462 36.4
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 4.8e-53 213.8 297 44.4
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 6.2e-53 213.4 549 34.4
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 3.1e-52 211.1 323 45.5
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 1.5e-51 208.8 432 37.0
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 2.0e-51 208.4 594 32.2
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 3.4e-51 207.6 286 43.7
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 7.6e-51 206.5 632 31.5
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 2.2e-50 204.9 300 43.0
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 3.2e-49 201.1 582 32.1
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 7.8e-48 196.4 287 46.7
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 3.0e-47 194.5 530 33.4
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 5.1e-47 193.7 612 29.1
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 3.6e-45 187.6 307 40.4
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 4.8e-45 187.2 555 33.3
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 4.0e-44 184.1 572 31.8
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 1.2e-43 182.6 471 35.9
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 5.4e-41 173.7 447 33.6
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 1.3e-39 169.1 426 33.1
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.6e-37 162.2 183 56.8
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 2.0e-35 155.2 285 37.9
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 4.5e-35 154.1 432 31.0
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.7e-34 152.1 285 37.5
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 8.4e-34 149.8 406 31.3
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 2.4e-28 131.7 290 33.8
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 3.4e-27 127.9 296 33.8
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 3.8e-26 124.4 618 26.4
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 4.9e-26 124.0 221 39.8
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 9.3e-25 119.8 196 42.3
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.9e-23 114.4 106 61.3
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 1.5e-22 112.5 447 30.4
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 4.8e-21 107.5 164 43.3
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 5.5e-17 94.0 249 34.9
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 1.4e-15 89.4 88 55.7
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 2.3e-15 88.6 211 38.4
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 2.4e-12 78.6 259 30.1
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 2.2e-10 72.0 490 26.1
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 2.2e-10 72.0 61 59.0
TAR374G0043 Trochodendron aralioides HOM05D004311 ORTHO05D005145 1.1e-09 69.7 160 34.4
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 7.2e-09 67.0 48 68.8
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 1.6e-08 65.9 227 31.3
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 1.6e-08 65.9 225 31.6
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 2.7e-08 65.1 477 26.0
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 1.4e-07 62.8 52 55.8
MD13G1258700 Malus domestica HOM05D004311 ORTHO05D005145 1.1e-06 59.7 56 53.6
PRCOL_00004343 Prasinoderma coloniale HOM05D004311 ORTHO05D005145 2.0e-06 58.9 261 27.2


User provided reference genes

Program Settings