Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 6.9e-69 263.8 132 100.0
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.5e-28 129.8 104 64.4
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.7e-27 126.3 71 83.1
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.7e-27 126.3 71 81.7
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 3.8e-27 125.2 71 80.3
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 8.5e-27 124.0 74 79.7
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 1.4e-26 123.2 71 81.7
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.9e-26 122.9 71 81.7
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 3.2e-26 122.1 71 80.3
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.2e-26 122.1 71 81.7
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.2e-26 122.1 71 81.7
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 3.2e-26 122.1 71 81.7
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 3.2e-26 122.1 71 78.9
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 4.2e-26 121.7 71 80.3
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 4.2e-26 121.7 71 78.9
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 4.2e-26 121.7 71 78.9
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 5.5e-26 121.3 109 58.7
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 5.5e-26 121.3 71 78.9
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 9.4e-26 120.6 71 77.5
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 9.4e-26 120.6 71 77.5
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.2e-25 120.2 71 77.5
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.2e-25 120.2 71 77.5
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.2e-25 120.2 71 77.5
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.2e-25 120.2 71 77.5
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.2e-25 120.2 74 74.3
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.1e-25 119.4 66 83.3
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 2.7e-25 119.0 71 78.9
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 2.7e-25 119.0 71 78.9
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 2.7e-25 119.0 71 78.9
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 3.6e-25 118.6 71 77.5
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 3.6e-25 118.6 71 78.9
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.1e-25 117.9 71 77.5
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 6.1e-25 117.9 71 77.5
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 6.1e-25 117.9 74 73.0
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 7.9e-25 117.5 71 77.5
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.0e-24 117.1 71 74.6
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.4e-24 116.7 71 73.2
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 1.8e-24 116.3 71 73.2
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.8e-24 116.3 71 77.5
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.8e-24 116.3 71 71.8
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 1.8e-24 116.3 74 75.7
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.0e-24 115.5 71 74.6
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 3.0e-24 115.5 71 78.9
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 3.9e-24 115.2 71 77.5
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 5.1e-24 114.8 71 76.1
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 5.1e-24 114.8 71 76.1
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.1e-24 114.8 71 74.6
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 5.1e-24 114.8 71 74.6
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 5.1e-24 114.8 71 76.1
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 8.8e-24 114.0 71 74.6
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 8.8e-24 114.0 71 74.6
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 8.8e-24 114.0 71 74.6
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.1e-23 113.6 66 78.8
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-23 113.6 66 78.8
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-23 113.6 66 78.8
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-23 113.6 66 78.8
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-23 113.6 66 78.8
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-23 113.6 66 78.8
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-23 113.6 66 78.8
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.5e-23 113.2 71 76.1
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.5e-23 113.2 71 73.2
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 2.0e-23 112.8 71 73.2
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 2.0e-23 112.8 71 73.2
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 2.0e-23 112.8 71 73.2
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.6e-23 112.5 71 73.2
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.6e-23 112.5 71 73.2
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 2.6e-23 112.5 71 70.4
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 2.6e-23 112.5 66 77.3
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 2.6e-23 112.5 71 73.2
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 2.6e-23 112.5 66 77.3
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 3.3e-23 112.1 72 69.4
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.3e-23 112.1 74 71.6
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 4.4e-23 111.7 71 73.2
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 7.4e-23 110.9 71 74.6
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 9.7e-23 110.5 92 62.0
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 9.7e-23 110.5 71 71.8
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.3e-22 110.2 130 46.2
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.7e-22 109.8 66 74.2
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 2.2e-22 109.4 71 73.2
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 2.2e-22 109.4 72 70.8
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.7e-22 108.6 65 76.9
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 3.7e-22 108.6 72 66.7
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 4.8e-22 108.2 71 71.8
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 6.3e-22 107.8 72 69.4
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 6.3e-22 107.8 71 69.0
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.4e-21 105.9 71 70.4
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 3.1e-21 105.5 71 70.4
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 4.1e-21 105.1 71 63.4
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 6.9e-21 104.4 71 70.4
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 9.1e-21 104.0 71 69.0
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 9.1e-21 104.0 72 62.5
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.5e-20 103.2 62 79.0
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 2.6e-20 102.4 71 67.6
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 2.6e-20 102.4 71 63.4
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 3.4e-20 102.1 71 67.6
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 3.4e-20 102.1 71 67.6
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 4.5e-20 101.7 71 67.6
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 4.5e-20 101.7 66 72.7
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 4.5e-20 101.7 71 63.4
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 7.7e-20 100.9 71 66.2
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-19 100.5 71 66.2
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-19 100.5 71 66.2
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-19 100.5 71 66.2
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-19 100.5 71 66.2
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 1.0e-19 100.5 71 66.2
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.0e-19 100.5 71 66.2
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.0e-19 100.5 71 62.0
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 1.3e-19 100.1 62 74.2
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 2.9e-19 99.0 71 64.8
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 3.8e-19 98.6 71 66.2
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 5.0e-19 98.2 71 62.0
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 8.5e-19 97.4 66 63.6
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 1.1e-18 97.1 72 58.3
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 1.1e-18 97.1 75 64.0
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-18 96.7 71 63.4
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.9e-18 96.3 71 60.6
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 3.2e-18 95.5 72 63.9
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 2.1e-17 92.8 72 55.6
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 3.6e-17 92.0 63 68.3
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 1.0e-16 90.5 66 63.6
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.0e-16 90.5 54 75.9
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 2.3e-16 89.4 66 65.2
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 3.7e-14 82.0 54 68.5
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 1.4e-13 80.1 54 66.7
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 9.1e-13 77.4 54 66.7
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.0e-12 76.3 71 54.9
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 5.9e-12 74.7 64 54.7
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 5.9e-12 74.7 64 54.7
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 5.9e-12 74.7 64 54.7
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 5.9e-12 74.7 73 52.1
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 7.7e-12 74.3 72 52.8
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 7.7e-12 74.3 49 67.3
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-11 73.9 73 52.1
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-11 73.9 73 52.1
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.0e-11 73.9 73 52.1
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 3.8e-11 72.0 74 47.3
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 2.5e-10 69.3 73 49.3
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 9.4e-10 67.4 47 59.6
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 1.0e-08 63.9 66 53.0
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.8e-08 63.2 74 35.1
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 1.7e-06 56.6 63 49.2


User provided reference genes

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