Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 9.0e-254 879.8 451 100.0
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 3.0e-172 609.0 338 92.3
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.4e-169 600.1 338 90.5
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 5.8e-168 594.7 339 90.6
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 4.9e-167 591.7 338 89.3
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 5.4e-166 588.2 338 88.8
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 7.1e-166 587.8 332 90.7
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 9.2e-166 587.4 338 88.2
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 3.5e-165 585.5 338 87.6
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 3.5e-165 585.5 338 88.5
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 7.8e-165 584.3 338 87.6
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.0e-164 583.9 338 87.6
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 2.3e-164 582.8 338 88.2
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 2.3e-164 582.8 338 87.6
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 2.3e-164 582.8 336 88.4
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.3e-164 582.8 334 88.6
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 3.0e-164 582.4 338 87.3
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 3.9e-164 582.0 338 87.3
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 3.9e-164 582.0 338 87.6
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 5.1e-164 581.6 333 88.9
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 5.1e-164 581.6 338 87.3
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 8.7e-164 580.9 335 87.5
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 1.1e-163 580.5 338 87.3
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.1e-163 580.5 339 87.6
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 1.1e-163 580.5 337 87.8
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 1.5e-163 580.1 338 87.0
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 2.5e-163 579.3 339 87.0
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 4.3e-163 578.6 338 87.6
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 4.3e-163 578.6 338 86.4
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 9.6e-163 577.4 338 86.1
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 9.6e-163 577.4 335 87.5
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 1.2e-162 577.0 338 86.4
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 2.1e-162 576.2 340 85.9
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.1e-162 576.2 338 85.8
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.6e-162 575.5 338 85.8
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.6e-162 575.5 339 86.7
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 4.7e-162 575.1 338 87.3
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.7e-162 575.1 339 86.1
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.4e-161 573.5 339 86.7
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 3.1e-161 572.4 339 86.1
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 3.1e-161 572.4 339 86.1
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 5.2e-161 571.6 332 86.7
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 6.9e-161 571.2 339 85.0
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 6.9e-161 571.2 339 85.8
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 2.0e-160 569.7 339 85.5
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 2.6e-160 569.3 317 90.9
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 2.6e-160 569.3 338 85.8
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 2.6e-160 569.3 338 84.9
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 2.6e-160 569.3 338 85.5
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 3.4e-160 568.9 339 86.7
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 3.4e-160 568.9 338 85.2
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 5.8e-160 568.2 338 84.9
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 5.8e-160 568.2 338 84.9
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 5.8e-160 568.2 338 84.9
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 5.8e-160 568.2 339 85.8
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 9.9e-160 567.4 335 86.3
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.3e-159 567.0 339 85.5
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.9e-159 565.8 338 84.6
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 2.9e-159 565.8 325 89.8
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 2.9e-159 565.8 338 84.9
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 3.8e-159 565.5 332 86.4
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 4.9e-159 565.1 337 85.5
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 4.9e-159 565.1 341 84.8
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 6.4e-159 564.7 338 84.9
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 1.1e-158 563.9 337 84.6
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 1.1e-158 563.9 332 86.4
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.4e-158 563.5 339 84.7
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.4e-158 563.5 332 85.8
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 4.2e-158 562.0 339 84.4
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 4.2e-158 562.0 339 84.4
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 2.7e-157 559.3 333 84.7
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 4.6e-157 558.5 340 83.5
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 7.8e-157 557.8 340 84.1
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.0e-156 557.4 339 83.5
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 1.0e-156 557.4 334 85.3
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 1.0e-156 557.4 335 83.9
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 1.3e-156 557.0 354 82.5
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 2.3e-156 556.2 338 83.4
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.1e-155 553.9 333 84.7
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 2.5e-155 552.7 337 83.4
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 7.3e-155 551.2 380 76.8
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.6e-154 550.1 327 86.5
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 2.1e-154 549.7 332 83.7
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.1e-153 547.4 338 80.5
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 5.3e-153 545.0 335 81.8
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 6.9e-153 544.7 321 86.3
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 1.5e-152 543.5 319 87.1
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 4.5e-152 542.0 335 81.2
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 6.4e-151 538.1 336 80.7
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 6.4e-151 538.1 332 82.5
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 6.4e-151 538.1 336 80.7
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 8.4e-151 537.7 336 80.7
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 8.4e-151 537.7 309 87.7
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 2.4e-150 536.2 336 79.8
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 5.4e-150 535.0 336 80.4
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 9.3e-150 534.3 309 87.4
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.2e-149 533.9 319 84.0
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 1.2e-149 533.9 336 80.1
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 1.2e-149 533.9 336 79.8
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 1.6e-149 533.5 336 80.1
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 2.1e-149 533.1 337 79.5
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 2.7e-149 532.7 335 80.0
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 2.7e-149 532.7 335 80.0
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 3.5e-149 532.3 336 79.5
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 4.6e-149 531.9 336 79.8
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 6.0e-149 531.6 335 79.4
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 6.0e-149 531.6 335 79.7
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 6.0e-149 531.6 335 79.7
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 7.9e-149 531.2 338 78.7
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 1.0e-148 530.8 338 79.0
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.3e-148 529.6 320 84.1
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 3.9e-148 528.9 337 78.9
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 4.3e-147 525.4 432 66.2
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 4.3e-147 525.4 335 79.1
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 5.6e-147 525.0 336 79.2
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 7.4e-147 524.6 339 80.8
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 1.6e-146 523.5 351 76.4
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 4.0e-145 518.8 343 77.3
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 1.7e-143 513.5 336 75.0
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 1.2e-141 507.3 345 75.7
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 1.6e-141 506.9 332 74.4
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 1.6e-141 506.9 341 74.2
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 6.0e-141 505.0 420 67.9
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.3e-140 503.8 378 72.8
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 5.6e-139 498.4 316 79.1
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 1.3e-138 497.3 317 81.4
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 4.5e-136 488.8 334 71.9
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.8e-136 488.4 334 72.2
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 5.1e-132 475.3 338 76.9
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.1e-129 467.6 271 87.8
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 6.9e-129 464.9 264 90.5
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.1e-126 457.6 264 89.4
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.1e-126 457.6 264 89.4
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 1.9e-126 456.8 298 78.9
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 1.8e-121 440.3 320 68.1
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.3e-119 434.1 338 70.1
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 7.0e-113 411.8 344 62.5
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 3.0e-108 396.4 238 83.6
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 6.3e-106 388.7 251 78.1
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 4.2e-102 375.9 311 58.8
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.8e-100 370.5 251 76.5
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 3.5e-96 356.3 216 83.3
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 1.7e-95 354.0 241 72.6
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 3.4e-91 339.7 330 55.5
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 1.1e-89 334.7 317 53.3
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 6.6e-55 219.2 154 72.7
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 1.3e-31 141.7 77 89.6
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.7e-29 133.7 163 50.3
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.4e-28 131.7 80 80.0
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 1.0e-26 125.6 74 83.8
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 2.9e-26 124.0 118 61.0
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 6.5e-26 122.9 168 50.6
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.1e-20 105.5 109 56.9
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.3e-15 88.6 51 82.4
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 1.1e-14 85.5 118 45.8
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 2.0e-11 74.7 57 70.2
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 5.9e-11 73.2 42 78.6
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 2.9e-10 70.9 60 63.3
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 2.9e-10 70.9 60 63.3
Dinv12390 Davidia involucrata HOM05D010363 ORTHO05D008693 2.7e-08 64.3 93 41.9
Dinv14202 Davidia involucrata HOM05D010363 ORTHO05D008693 2.7e-08 64.3 93 41.9
Dinv01692 Davidia involucrata HOM05D010363 ORTHO05D008693 3.6e-08 63.9 69 47.8
Dinv02789 Davidia involucrata HOM05D010363 ORTHO05D008693 4.6e-08 63.5 69 49.3
Dinv06297 Davidia involucrata HOM05D010363 ORTHO05D008693 4.6e-08 63.5 69 49.3
Dinv10293 Davidia involucrata HOM05D010363 ORTHO05D008693 4.6e-08 63.5 96 41.7
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 6.1e-08 63.2 79 45.6
Dinv02844 Davidia involucrata HOM05D010363 ORTHO05D008693 1.0e-07 62.4 69 49.3
Dinv01243 Davidia involucrata HOM05D010363 ORTHO05D013864 1.4e-07 62.0 69 47.8
Dinv11999 Davidia involucrata HOM05D010363 ORTHO05D008693 2.3e-07 61.2 93 40.9
Dinv19313 Davidia involucrata HOM05D010363 ORTHO05D008693 2.3e-07 61.2 69 47.8
Dinv16347 Davidia involucrata HOM05D000246 ORTHO05D179212 8.8e-07 59.3 56 55.4
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 9.7e-06 55.8 34 76.5
Medtr5g030880 Medicago truncatula HOM05D000871 ORTHO05D036729 9.7e-06 55.8 90 44.4


User provided reference genes

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