Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 2.4e-279 964.9 516 100.0
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 2.4e-101 373.6 453 52.5
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 1.2e-89 334.7 485 47.2
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 3.1e-80 303.5 521 42.6
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 5.4e-77 292.7 515 45.0
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 3.0e-75 287.0 450 44.7
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 4.0e-72 276.6 448 43.8
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 3.2e-69 266.9 475 41.5
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 9.2e-69 265.4 435 43.4
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 2.1e-68 264.2 463 42.1
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 7.8e-68 262.3 437 43.2
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 1.7e-67 261.2 474 42.4
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 1.6e-65 254.6 531 38.0
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 5.6e-58 229.6 523 36.7
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 1.1e-48 198.7 448 36.2
HanXRQChr02g0058051 Helianthus annuus HOM05D008213 ORTHO05D009787 3.9e-43 180.3 451 34.1
Sc13g0006830 Simmondsia chinensis HOM05D022167 ORTHO05D009787 8.1e-41 172.6 404 36.4
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 7.9e-36 156.0 468 31.8
ECA233G5141 Erigeron canadensis HOM05D008213 ORTHO05D009787 6.7e-35 152.9 424 33.0
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 3.8e-30 137.1 495 28.1
AUR62015410 Chenopodium quinoa HOM05D022167 ORTHO05D009787 3.2e-29 134.0 404 31.2
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 7.1e-29 132.9 497 28.6
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 7.1e-29 132.9 499 28.7
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 9.3e-29 132.5 464 28.0
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 1.6e-28 131.7 501 27.3
Lsat_1_v5_gn_6_57280 Lactuca sativa HOM05D008213 ORTHO05D009787 1.6e-28 131.7 491 29.3
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 2.7e-28 131.0 501 28.7
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 3.5e-28 130.6 459 31.4
ClCG07G015580 Citrullus lanatus HOM05D008213 ORTHO05D009787 7.9e-28 129.4 304 33.9
AUR62002285 Chenopodium quinoa HOM05D022167 ORTHO05D009787 2.3e-27 127.9 407 30.7
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 3.0e-27 127.5 502 29.7
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 2.5e-26 124.4 500 28.6
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 4.3e-26 123.6 497 29.4
MELO3C017723.2 Cucumis melo HOM05D008213 ORTHO05D009787 9.6e-26 122.5 251 35.1
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 1.6e-25 121.7 497 28.2
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 2.1e-25 121.3 470 29.8
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 6.2e-25 119.8 204 35.3
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 8.2e-25 119.4 205 34.6
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 8.2e-25 119.4 205 34.6
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 8.2e-25 119.4 205 34.6
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 8.2e-25 119.4 205 34.6
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 8.2e-25 119.4 267 34.1
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 1.1e-24 119.0 205 34.6
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 1.4e-24 118.6 497 27.8
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 3.1e-24 117.5 204 38.2
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 3.1e-24 117.5 495 29.5
Ah.07g201850 Amaranthus hybridus HOM05D022167 ORTHO05D009787 9.0e-24 115.9 421 29.5
Atru.chr3.1540 Acer truncatum HOM05D022167 ORTHO05D009787 1.2e-23 115.5 334 36.2
CsaV3_4G003270 Cucumis sativus L. HOM05D008213 ORTHO05D009787 1.2e-23 115.5 251 33.1
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 2.0e-23 114.8 221 37.1
ECA248G0875 Erigeron canadensis HOM05D000554 ORTHO05D000860 3.4e-23 114.0 187 43.3
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 4.5e-23 113.6 487 27.5
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 7.6e-23 112.8 230 35.7
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 1.3e-22 112.1 500 27.6
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 2.2e-22 111.3 276 31.9
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 1.1e-21 109.0 411 29.2
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 2.5e-21 107.8 326 30.1
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 9.3e-21 105.9 502 28.3
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 1.2e-20 105.5 322 29.8
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 2.1e-20 104.8 278 32.0
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 3.5e-20 104.0 195 36.9
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 4.6e-20 103.6 280 33.9
Lj3P205T14 Lonicera japonica HOM05D008213 ORTHO05D009787 6.1e-20 103.2 148 43.2
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 1.8e-19 101.7 501 28.3
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 3.9e-19 100.5 498 27.5
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 3.9e-19 100.5 231 37.2
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 8.7e-19 99.4 326 26.4
ATR0743G282 Amborella trichopoda HOM05D008213 ORTHO05D009787 1.1e-18 99.0 473 29.0
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 1.5e-18 98.6 187 29.9
MBI08_g22655_MAGBIO Magnolia biondii HOM05D008213 ORTHO05D009787 2.5e-18 97.8 514 24.3
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 8.2e-17 92.8 149 43.6
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.8e-16 91.7 496 26.0
arahy.Tifrunner.gnm1.ann1.JQ8CCA Arachis hypogaea HOM05D010840 ORTHO05D009787 1.3e-14 85.5 484 25.6
arahy.Tifrunner.gnm1.ann1.0UQ2B1 Arachis hypogaea HOM05D010840 ORTHO05D009787 2.9e-14 84.3 371 26.7
Ca_01266_v3 Cicer arietinum L. HOM05D010840 ORTHO05D009787 1.9e-13 81.6 474 25.1
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 4.2e-13 80.5 303 29.4
Os12g0230133 Oryza sativa ssp. japonica HOM05D065009 ORTHO05D009787 1.6e-12 78.6 336 25.3
Glyma.11G128800 Glycine max HOM05D010840 ORTHO05D009787 1.4e-11 75.5 254 32.3
Glyma.15G030900 Glycine max HOM05D010840 ORTHO05D009787 2.0e-10 71.6 202 32.7
TPR.G12768 Trifolium pratense HOM05D010840 ORTHO05D009787 3.3e-10 70.9 292 28.1
TPR.G18857 Trifolium pratense HOM05D010840 ORTHO05D009787 3.3e-10 70.9 279 28.0
VMungo1080G1829 Vigna mungo HOM05D002632 ORTHO05D002881 3.3e-10 70.9 178 33.1
VMungo1127G1898 Vigna mungo HOM05D010840 ORTHO05D009787 1.7e-09 68.6 303 27.7
Phvul.011G055300 Phaseolus vulgaris HOM05D010840 ORTHO05D009787 1.8e-08 65.1 307 26.1
Medtr2g098610 Medicago truncatula HOM05D010840 ORTHO05D009787 1.0e-06 59.3 322 27.6
Zm00001eb133750 Zea mays HOM05D065009 ORTHO05D009787 2.2e-06 58.2 336 24.4
Lalb_Chr24g0396871 Lupinus albus HOM05D010840 ORTHO05D009787 6.5e-06 56.6 179 28.5


User provided reference genes

Program Settings