Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44198 Davidia involucrata HOM05D006537 ORTHO05D008186 1.0e-97 360.1 187 100.0
Dinv22722 Davidia involucrata HOM05D006537 ORTHO05D008186 2.5e-93 345.5 184 95.7
CSS0005792 Camellia sinensis var. sinensis HOM05D006537 ORTHO05D008186 5.7e-93 344.4 185 94.6
TWI63G0033 Tripterygium wilfordii HOM05D006537 ORTHO05D008186 3.1e-91 338.6 184 92.4
TAR633G2589 Trochodendron aralioides HOM05D006537 ORTHO05D008186 4.1e-91 338.2 184 94.0
Ciclev10021930m.g Citrus clementina HOM05D006537 ORTHO05D008186 1.2e-90 336.7 184 91.3
Gohir.A02G015200 Gossypium hirsutum HOM05D006537 ORTHO05D008186 4.5e-90 334.7 184 90.8
Manes.04G042325 Manihot esculenta HOM05D006537 ORTHO05D008186 5.8e-90 334.3 184 91.3
vmacro22675 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 5.8e-90 334.3 185 90.3
Thecc.04G185300 Theobroma cacao HOM05D006537 ORTHO05D008186 1.7e-89 332.8 184 90.2
COL.COLO4_24411 Corchorus olitorius HOM05D006537 ORTHO05D008186 2.9e-89 332.0 184 89.7
Potri.007G127400 Populus trichocarpa HOM05D006537 ORTHO05D008186 2.9e-89 332.0 184 91.8
Actinidia35970 Actinidia chinensis HOM05D006537 ORTHO05D008186 5.0e-89 331.3 185 89.7
Gohir.D02G016700 Gossypium hirsutum HOM05D006537 ORTHO05D008186 5.0e-89 331.3 184 89.7
QL10p048350 Quercus lobata HOM05D006537 ORTHO05D008186 6.5e-89 330.9 184 88.0
Haze_01534 Corylus avellana HOM05D006537 ORTHO05D008186 8.4e-89 330.5 184 90.2
GSVIVG01010746001 Vitis vinifera HOM05D006537 ORTHO05D008186 8.4e-89 330.5 184 90.8
MD04G1039500 Malus domestica HOM05D006537 ORTHO05D008186 1.1e-88 330.1 184 89.1
PGSC0003DMG400027008 Solanum tuberosum HOM05D006537 ORTHO05D008186 1.4e-88 329.7 184 90.2
Solyc06g073410.3 Solanum lycopersicum HOM05D006537 ORTHO05D008186 2.5e-88 328.9 184 89.7
Sopen06g029790 Solanum pennellii HOM05D006537 ORTHO05D008186 2.5e-88 328.9 184 89.7
Atru.chr3.1537 Acer truncatum HOM05D006537 ORTHO05D008186 3.2e-88 328.6 184 89.7
Gorai.005G020200 Gossypium raimondii HOM05D006537 ORTHO05D008186 3.2e-88 328.6 184 89.1
Prupe.1G190300 Prunus persica HOM05D006537 ORTHO05D008186 3.2e-88 328.6 184 88.0
Nitab4.5_0003132g0110 Nicotiana tabacum HOM05D006537 ORTHO05D008186 5.5e-88 327.8 184 89.7
Duzib212G0958 Durio zibethinus HOM05D006537 ORTHO05D008186 7.1e-88 327.4 184 88.6
CANSAT78G1337 Cannabis sativa HOM05D006537 ORTHO05D008186 2.1e-87 325.9 185 87.0
Eucgr.A00074 Eucalyptus grandis HOM05D006537 ORTHO05D008186 2.1e-87 325.9 185 87.6
Eucgr.A00271 Eucalyptus grandis HOM05D006537 ORTHO05D008186 2.1e-87 325.9 185 87.6
Actinidia34608 Actinidia chinensis HOM05D006537 ORTHO05D008186 6.1e-87 324.3 185 88.1
Duzib268G1074 Durio zibethinus HOM05D006537 ORTHO05D008186 6.1e-87 324.3 184 87.0
Rhsim09G0028500 Rhododendron simsii HOM05D006537 ORTHO05D008186 6.1e-87 324.3 198 84.8
Aqoxy2G04100 Aquilegia oxysepala HOM05D006537 ORTHO05D008186 7.9e-87 323.9 184 87.0
Nitab4.5_0004579g0020 Nicotiana tabacum HOM05D006537 ORTHO05D008186 1.0e-86 323.6 184 89.7
CiPaw.01G101300 Carya illinoinensis HOM05D006537 ORTHO05D008186 1.8e-86 322.8 184 88.0
Peaxi162Scf00375g00618 Petunia axillaris HOM05D006537 ORTHO05D008186 2.3e-86 322.4 184 87.5
Lj3g0010197 Lotus japonicus HOM05D006537 ORTHO05D008186 5.1e-86 321.2 184 85.3
Sabra07G0103400 Salix brachista HOM05D006537 ORTHO05D008186 1.1e-85 320.1 194 85.1
AL4G26710 Arabidopsis lyrata HOM05D006537 ORTHO05D008186 1.9e-85 319.3 184 84.2
AT2G31440 Arabidopsis thaliana HOM05D006537 ORTHO05D008186 1.9e-85 319.3 184 84.2
Sp4g13920 Schrenkiella parvula HOM05D006537 ORTHO05D008186 3.3e-85 318.5 184 83.7
Ca_20779_v3 Cicer arietinum L. HOM05D006537 ORTHO05D008186 4.3e-85 318.2 184 84.8
Psat7g214000 Pisum sativum HOM05D006537 ORTHO05D008186 5.7e-85 317.8 184 85.9
Carub.0004s1277 Capsella rubella HOM05D006537 ORTHO05D008186 7.4e-85 317.4 184 83.2
Cc00_g09850 Coffea canephora HOM05D006537 ORTHO05D008186 7.4e-85 317.4 188 86.2
TPR.G34202 Trifolium pratense HOM05D006537 ORTHO05D008186 1.6e-84 316.2 184 83.7
AUR62015408 Chenopodium quinoa HOM05D006537 ORTHO05D008186 2.2e-84 315.8 186 83.9
arahy.Tifrunner.gnm1.ann1.RQ8JR0 Arachis hypogaea HOM05D006537 ORTHO05D008186 2.8e-84 315.5 184 83.2
arahy.Tifrunner.gnm1.ann1.W0CVEC Arachis hypogaea HOM05D006537 ORTHO05D008186 2.8e-84 315.5 184 83.2
BraA03t11027Z Brassica rapa HOM05D006537 ORTHO05D008186 4.8e-84 314.7 184 83.7
PSO675G9308 Papaver somniferum HOM05D006537 ORTHO05D008186 4.8e-84 314.7 184 84.8
BcaC01g05952 Brassica carinata HOM05D006537 ORTHO05D008186 6.3e-84 314.3 184 83.2
C03p20710 Brassica napus HOM05D006537 ORTHO05D008186 6.3e-84 314.3 184 83.2
BolC3t14452H Brassica oleracea HOM05D006537 ORTHO05D008186 6.3e-84 314.3 184 83.2
A03p17600 Brassica napus HOM05D006537 ORTHO05D008186 8.2e-84 313.9 184 83.7
PSO732G0008 Papaver somniferum HOM05D006537 ORTHO05D008186 1.8e-83 312.8 184 83.7
Thhalv10017140m.g Eutrema salsugineum HOM05D006537 ORTHO05D008186 2.4e-83 312.4 184 83.7
FvH4_4g11160 Fragaria vesca HOM05D006537 ORTHO05D008186 3.1e-83 312.0 184 85.3
CARHR125090 Cardamine hirsuta HOM05D006537 ORTHO05D008186 5.3e-83 311.2 184 82.6
VMungo1127G2200 Vigna mungo HOM05D006537 ORTHO05D008186 9.0e-83 310.5 182 84.6
Phvul.011G055200 Phaseolus vulgaris HOM05D006537 ORTHO05D008186 2.0e-82 309.3 184 83.7
Oeu011639.1 Olea europaea HOM05D006537 ORTHO05D008186 2.6e-82 308.9 184 85.3
Glyma.12G053200 Glycine max HOM05D006537 ORTHO05D008186 3.4e-82 308.5 184 82.1
Medtr4g067050 Medicago truncatula HOM05D006537 ORTHO05D008186 4.5e-82 308.1 184 82.6
SGA_v2.0_scaffold74G24571 Striga asiatica HOM05D006537 ORTHO05D008186 4.5e-82 308.1 184 82.1
ClCG08G004470 Citrullus lanatus HOM05D006537 ORTHO05D008186 7.7e-82 307.4 184 83.2
ECA238G3138 Erigeron canadensis HOM05D000961 ORTHO05D000001 1.7e-81 306.2 184 83.2
Glyma.11G128700 Glycine max HOM05D006537 ORTHO05D008186 2.2e-81 305.8 184 83.2
HanXRQChr14g0433111 Helianthus annuus HOM05D006537 ORTHO05D008186 2.2e-81 305.8 184 81.5
BcaB01g04045 Brassica carinata HOM05D006537 ORTHO05D008186 5.0e-81 304.7 184 82.1
MELO3C011641.2 Cucumis melo HOM05D006537 ORTHO05D008186 5.0e-81 304.7 184 82.6
CsaV3_6G003840 Cucumis sativus L. HOM05D006537 ORTHO05D008186 1.1e-80 303.5 184 82.1
CDE04G1858 Ceratophyllum demersum HOM05D006537 ORTHO05D008186 4.2e-80 301.6 185 80.5
THA.LOC104826193 Tarenaya hassleriana HOM05D006537 ORTHO05D008186 5.5e-80 301.2 184 82.6
EL10Ac3g05587 Beta vulgaris HOM05D006537 ORTHO05D008186 2.7e-79 298.9 207 74.4
Migut.C00288 Erythranthe guttata HOM05D006537 ORTHO05D008186 4.6e-79 298.1 184 81.0
Lalb_Chr01g0003221 Lupinus albus HOM05D006537 ORTHO05D008186 7.9e-79 297.4 184 80.4
Sed0000584 Sechium edule HOM05D006537 ORTHO05D008186 1.0e-78 297.0 191 79.6
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.4e-78 296.6 184 78.3
Nn1g09574 Nelumbo nucifera HOM05D006537 ORTHO05D008186 2.3e-78 295.8 160 91.2
Cpa.g.sc409.1 Carica papaya HOM05D006537 ORTHO05D008186 1.1e-77 293.5 184 82.6
Lsat_1_v5_gn_2_34721 Lactuca sativa HOM05D006537 ORTHO05D008186 1.1e-77 293.5 184 79.3
HPP92_005584 Vanilla planifolia HOM05D006537 ORTHO05D008186 1.3e-76 290.0 184 77.7
Aa31LG5G5440 Aethionema arabicum HOM05D006537 ORTHO05D008186 1.7e-76 289.7 182 79.7
HPP92_005589 Vanilla planifolia HOM05D006537 ORTHO05D008186 1.7e-76 289.7 184 77.7
SEGI_14947 Sequoiadendron giganteum HOM05D006537 ORTHO05D008186 4.8e-76 288.1 186 76.3
RcHm_v2.0_Chr4g0407291 Rosa chinensis HOM05D006537 ORTHO05D008186 5.3e-75 284.6 184 80.4
ATR0686G132 Amborella trichopoda HOM05D006537 ORTHO05D008186 1.0e-73 280.4 184 77.7
CAN.G65.183 Capsicum annuum HOM05D006537 ORTHO05D008186 5.0e-73 278.1 184 78.3
Zm00001eb237480 Zea mays HOM05D006537 ORTHO05D008186 1.4e-72 276.6 184 72.3
Os02g0272600 Oryza sativa ssp. japonica HOM05D006537 ORTHO05D008186 1.5e-69 266.5 186 69.9
Sc25g0002980 Simmondsia chinensis HOM05D006537 ORTHO05D008186 3.2e-64 248.8 184 71.7
AUR62002287 Chenopodium quinoa HOM05D006537 ORTHO05D008186 4.0e-62 241.9 139 81.3
AagrBONN_evm.TU.Sc2ySwM_344.2170 Anthoceros agrestis HOM05D006537 ORTHO05D008186 1.7e-57 226.5 184 60.3
PGR083G1737 Punica granatum HOM05D006537 ORTHO05D008186 2.2e-57 226.1 184 66.3
Mapoly0042s0024 Marchantia polymorpha HOM05D006537 ORTHO05D008186 6.5e-57 224.6 184 58.7
A10p04320 Brassica napus HOM05D006537 ORTHO05D008186 1.9e-56 223.0 133 77.4
FAN07G2858 Fragaria x ananassa HOM05D006537 ORTHO05D008186 4.4e-53 211.8 184 65.2
Hund03149 Selenicereus undatus HOM05D006537 ORTHO05D008186 7.5e-53 211.1 204 63.2
Lj6A56G22 Lonicera japonica HOM05D006537 ORTHO05D008186 3.7e-52 208.8 184 64.1
MSTRG.24999 Avicennia marina HOM05D006537 ORTHO05D008186 4.1e-51 205.3 184 63.0
SMO174G0097 Selaginella moellendorffii HOM05D006537 ORTHO05D008186 2.7e-50 202.6 184 56.5
Pp3c14_4280 Physcomitrium patens HOM05D006537 ORTHO05D008186 4.2e-48 195.3 182 53.8
Pp3c10_5780 Physcomitrium patens HOM05D006537 ORTHO05D008186 2.3e-46 189.5 182 50.0
PSO675G6606 Papaver somniferum HOM05D006537 ORTHO05D008186 5.2e-46 188.3 128 71.9
PSO229G0026 Papaver somniferum HOM05D006537 ORTHO05D008186 2.0e-45 186.4 128 71.1
PSO675G1145 Papaver somniferum HOM05D006537 ORTHO05D008186 2.6e-45 186.0 136 69.1
PSO832G3398 Papaver somniferum HOM05D006537 ORTHO05D008186 7.7e-42 174.5 97 88.7
SalBow7G4202 Salvia bowleyana HOM05D006537 ORTHO05D008186 1.3e-41 173.7 110 76.4
PSO017G0422 Papaver somniferum HOM05D006537 ORTHO05D008186 6.6e-41 171.4 101 86.1
BraA10t42709Z Brassica rapa HOM05D006537 ORTHO05D008186 2.6e-37 159.5 95 82.1
DCAR_022903 Daucus carota HOM05D006537 ORTHO05D008186 3.4e-37 159.1 119 68.9
BraA10t42699Z Brassica rapa HOM05D006537 ORTHO05D008186 4.9e-36 155.2 97 78.4
SHI21233 Sapria himalayana HOM05D006537 ORTHO05D008186 1.2e-29 134.0 94 71.3
Cre13.g576300 Chlamydomonas reinhardtii HOM05D006537 ORTHO05D008186 7.0e-27 124.8 175 43.4
Lj6P622T45 Lonicera japonica HOM05D006537 ORTHO05D008186 7.8e-26 121.3 66 87.9
CBR_g29804 Chara braunii HOM05D006537 ORTHO05D008186 7.1e-19 98.2 71 67.6
vmacro00700 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 3.7e-12 75.9 106 50.9
Sopen06g005930 Solanum pennellii HOM05D006537 ORTHO05D008186 2.5e-08 63.2 38 92.1
A10p04420 Brassica napus HOM05D006537 ORTHO05D008186 8.9e-06 54.7 32 84.4


User provided reference genes

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