Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 2.3e-143 512.3 275 100.0
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 3.4e-102 375.6 252 78.6
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 2.9e-101 372.5 261 75.9
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.8e-96 355.9 257 73.2
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 4.0e-95 352.1 260 72.3
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 2.0e-94 349.7 261 72.4
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 2.0e-94 349.7 261 72.0
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 2.6e-94 349.4 257 73.2
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 3.4e-94 349.0 261 71.6
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 1.3e-93 347.1 257 71.6
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 3.2e-92 342.4 256 70.3
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 3.2e-92 342.4 258 73.3
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 4.1e-92 342.0 257 72.0
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.1e-92 342.0 251 72.5
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.1e-92 342.0 251 72.1
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 5.4e-92 341.7 263 70.0
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 7.0e-92 341.3 252 71.4
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 7.0e-92 341.3 257 72.4
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 2.0e-91 339.7 251 72.1
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 2.7e-91 339.3 252 72.6
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 3.5e-91 339.0 261 69.3
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 4.6e-91 338.6 259 69.1
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 1.3e-90 337.0 265 67.9
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 1.7e-90 336.7 260 69.6
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 5.0e-90 335.1 257 67.3
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 1.9e-89 333.2 260 65.8
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.9e-89 333.2 255 69.4
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 1.9e-89 333.2 262 69.1
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.3e-89 332.4 262 67.2
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 3.3e-89 332.4 264 67.0
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 9.5e-89 330.9 261 67.8
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.2e-88 330.5 254 68.5
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 2.1e-88 329.7 259 70.7
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 2.8e-88 329.3 256 66.8
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 2.8e-88 329.3 257 65.8
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 2.8e-88 329.3 268 69.8
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 3.6e-88 328.9 252 70.2
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 4.7e-88 328.6 260 65.8
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 6.2e-88 328.2 266 65.0
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 6.2e-88 328.2 261 65.9
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 8.1e-88 327.8 262 65.6
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.1e-87 327.4 255 68.6
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 1.4e-87 327.0 256 67.6
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.4e-87 327.0 259 67.6
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 1.8e-87 326.6 266 64.3
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 5.2e-87 325.1 251 68.9
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 1.2e-86 323.9 256 66.4
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.5e-86 323.6 260 65.4
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 1.5e-86 323.6 257 65.4
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 1.5e-86 323.6 256 66.0
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 5.8e-86 321.6 256 65.6
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 7.5e-86 321.2 242 70.2
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 9.8e-86 320.9 256 64.8
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.3e-85 320.5 247 68.4
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.7e-85 320.1 263 65.8
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.7e-85 320.1 256 68.8
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 2.2e-85 319.7 259 67.6
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 2.9e-85 319.3 256 66.8
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 3.7e-85 318.9 260 64.2
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 8.3e-85 317.8 256 65.2
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 1.4e-84 317.0 262 67.6
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.9e-84 316.6 247 68.4
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 3.2e-84 315.8 256 64.8
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 5.4e-84 315.1 258 65.5
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 5.4e-84 315.1 259 68.0
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 7.1e-84 314.7 246 66.7
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.2e-83 313.9 255 65.1
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.5e-83 312.4 273 60.8
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 3.5e-83 312.4 258 64.7
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 7.8e-83 311.2 255 63.9
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.7e-82 310.1 261 63.6
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.7e-82 310.1 245 65.7
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 3.9e-82 308.9 261 65.9
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.6e-82 307.8 263 62.0
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-81 307.0 263 62.0
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 7.3e-81 304.7 257 63.0
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.3e-81 304.7 263 61.6
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 1.2e-80 303.9 259 65.3
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.2e-80 303.9 258 64.7
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.6e-80 303.5 258 64.7
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 3.6e-80 302.4 258 64.0
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-79 300.8 263 60.8
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 1.4e-79 300.4 244 65.2
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.0e-78 296.6 272 59.2
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 2.6e-78 296.2 326 52.5
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.5e-75 285.8 211 70.6
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.0e-74 284.3 263 60.8
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 9.6e-73 277.7 244 64.8
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.4e-71 273.9 256 58.6
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.2e-70 270.8 256 58.2
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 8.4e-69 264.6 245 61.2
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 5.4e-68 261.9 256 57.8
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 2.7e-67 259.6 264 53.8
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 2.1e-64 250.0 279 51.6
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 5.8e-62 241.9 251 52.2
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 4.3e-57 225.7 256 50.4
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 4.8e-56 222.2 243 49.8
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 6.2e-56 221.9 173 66.5
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 9.0e-55 218.0 197 65.0
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 2.2e-53 213.4 168 63.7
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 2.7e-51 206.5 181 57.5
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 1.5e-49 200.7 252 43.3
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 6.2e-48 195.3 224 47.8
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 1.4e-47 194.1 254 44.9
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 3.2e-44 183.0 119 74.8
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 8.4e-37 158.3 294 39.8
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 5.5e-36 155.6 121 71.1
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.5e-33 147.5 121 62.0
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.3e-33 146.0 115 65.2
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 1.8e-31 140.6 112 71.4
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 1.2e-30 137.9 112 65.2
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 5.9e-30 135.6 108 65.7
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 9.4e-28 128.3 84 75.0
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.6e-27 127.5 90 73.3
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 2.1e-27 127.1 84 71.4
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.1e-27 125.6 102 63.7
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.9e-27 125.2 104 64.4
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 1.5e-25 120.9 152 46.7
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 3.7e-24 116.3 74 79.7
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 1.8e-23 114.0 262 32.1
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.8e-23 114.0 81 76.5
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.8e-23 114.0 104 61.5
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 1.5e-22 110.9 74 81.1
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 3.4e-22 109.8 248 29.0
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 2.1e-19 100.5 97 59.8
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.7e-19 100.1 80 67.5
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 7.9e-19 98.6 99 57.6
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 5.1e-18 95.9 86 57.0
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 3.8e-13 79.7 122 39.3
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.8e-13 79.7 207 31.9
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 1.4e-10 71.2 43 74.4
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 3.0e-10 70.1 95 44.2
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 4.0e-10 69.7 102 46.1
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 3.3e-09 66.6 97 42.3
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 2.4e-07 60.5 141 34.8


User provided reference genes

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