Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44119 Davidia involucrata HOM05D007090 ORTHO05D008993 6.4e-109 397.9 278 100.0
Actinidia22817 Actinidia chinensis HOM05D007090 ORTHO05D008993 1.7e-56 223.8 270 58.9
TAR375G0613 Trochodendron aralioides HOM05D007090 ORTHO05D008993 1.5e-49 200.7 281 44.8
vmacro13441 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 2.8e-48 196.4 310 44.5
Actinidia22762 Actinidia chinensis HOM05D007090 ORTHO05D008993 4.8e-48 195.7 241 57.7
GSVIVG01027682001 Vitis vinifera HOM05D007090 ORTHO05D008993 1.6e-46 190.7 266 50.0
Cc02_g24410 Coffea canephora HOM05D007090 ORTHO05D008993 5.9e-46 188.7 267 50.6
MSTRG.4910 Avicennia marina HOM05D007090 ORTHO05D008993 7.2e-44 181.8 290 53.8
DCAR_015886 Daucus carota HOM05D007090 ORTHO05D008993 9.4e-44 181.4 273 50.9
Lsat_1_v5_gn_4_45521 Lactuca sativa HOM05D007090 ORTHO05D008993 9.4e-44 181.4 265 44.5
Rhsim07G0031100 Rhododendron simsii HOM05D007090 ORTHO05D008993 1.6e-43 180.6 266 50.4
Potri.014G060700 Populus trichocarpa HOM05D007090 ORTHO05D008993 2.6e-41 173.3 271 48.7
vmacro22435 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 2.2e-40 170.2 122 72.1
Oeu051923.2 Olea europaea HOM05D007090 ORTHO05D008993 2.4e-39 166.8 298 45.0
Nitab4.5_0000859g0240 Nicotiana tabacum HOM05D007090 ORTHO05D008993 7.0e-39 165.2 290 40.0
Manes.05G048800 Manihot esculenta HOM05D007090 ORTHO05D008993 2.7e-38 163.3 254 57.9
Sc26g0001310 Simmondsia chinensis HOM05D007090 ORTHO05D008993 4.5e-38 162.5 297 40.4
QL04p038719 Quercus lobata HOM05D007090 ORTHO05D008993 1.0e-37 161.4 242 52.1
Migut.N01613 Erythranthe guttata HOM05D007090 ORTHO05D008993 2.2e-37 160.2 247 47.4
HanXRQChr03g0088131 Helianthus annuus HOM05D007090 ORTHO05D008993 2.2e-37 160.2 266 44.4
CiPaw.13G032600 Carya illinoinensis HOM05D007090 ORTHO05D008993 3.8e-37 159.5 272 45.2
Hma1.2p1_0005F.1_g004490 Hydrangea macrophylla HOM05D007090 ORTHO05D008993 1.9e-36 157.1 256 48.0
CSS0011917 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 3.2e-36 156.4 150 58.0
Solyc01g090920.3 Solanum lycopersicum HOM05D007090 ORTHO05D008993 5.5e-36 155.6 288 39.9
Sopen01g036660 Solanum pennellii HOM05D007090 ORTHO05D008993 1.6e-35 154.1 289 41.5
Sabra14G0044500 Salix brachista HOM05D007090 ORTHO05D008993 3.6e-35 152.9 261 47.9
Prupe.2G138200 Prunus persica HOM05D007090 ORTHO05D008993 1.8e-34 150.6 281 44.1
Thecc.01G382600 Theobroma cacao HOM05D007090 ORTHO05D008993 2.0e-33 147.1 244 44.7
Nitab4.5_0008963g0010 Nicotiana tabacum HOM05D007090 ORTHO05D008993 5.7e-33 145.6 286 37.8
VMungo0331G0297 Vigna mungo HOM05D007090 ORTHO05D008993 2.2e-32 143.7 277 43.7
SalBow5G5305 Salvia bowleyana HOM05D007090 ORTHO05D008993 2.8e-32 143.3 281 42.0
Hund17045 Selenicereus undatus HOM05D007090 ORTHO05D008993 2.8e-32 143.3 278 38.8
Lj3g0011300 Lotus japonicus HOM05D007090 ORTHO05D008993 3.7e-32 142.9 279 45.9
CANSAT56G4322 Cannabis sativa HOM05D007090 ORTHO05D008993 4.8e-32 142.5 272 41.9
CANSAT56G0199 Cannabis sativa HOM05D007090 ORTHO05D008993 6.3e-32 142.1 259 42.9
COL.COLO4_12490 Corchorus olitorius HOM05D007090 ORTHO05D008993 8.3e-32 141.7 255 52.2
PGR042G2604 Punica granatum HOM05D007090 ORTHO05D008993 8.3e-32 141.7 242 44.6
Haze_02682 Corylus avellana HOM05D007090 ORTHO05D008993 1.1e-31 141.4 265 47.5
Nn1g01037 Nelumbo nucifera HOM05D007090 ORTHO05D008993 1.1e-31 141.4 273 42.1
Medtr4g026500 Medicago truncatula HOM05D007090 ORTHO05D008993 1.4e-31 141.0 275 50.2
Peaxi162Scf00803g00118 Petunia axillaris HOM05D007090 ORTHO05D008993 1.4e-31 141.0 132 55.3
CAN.G1469.17 Capsicum annuum HOM05D007090 ORTHO05D008993 1.8e-31 140.6 278 41.4
CSS0004451 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 4.1e-31 139.4 103 70.9
Gohir.D11G083500 Gossypium hirsutum HOM05D007090 ORTHO05D008993 5.4e-31 139.0 271 46.1
Ca_19835_v3 Cicer arietinum L. HOM05D007090 ORTHO05D008993 1.2e-30 137.9 264 44.3
Ciclev10021511m.g Citrus clementina HOM05D007090 ORTHO05D008993 1.6e-30 137.5 286 44.8
PSO063G1752 Papaver somniferum HOM05D007090 ORTHO05D008993 2.0e-30 137.1 295 36.9
TWI23G0238 Tripterygium wilfordii HOM05D007090 ORTHO05D008993 2.0e-30 137.1 263 39.2
Glyma.03G032000 Glycine max HOM05D007090 ORTHO05D008993 2.7e-30 136.7 279 48.4
PSO782G4184 Papaver somniferum HOM05D007090 ORTHO05D008993 7.7e-30 135.2 296 37.2
arahy.Tifrunner.gnm1.ann1.UP4D5N Arachis hypogaea HOM05D007090 ORTHO05D008993 1.3e-29 134.4 254 40.6
Psat7g236160 Pisum sativum HOM05D007090 ORTHO05D008993 1.7e-29 134.0 273 46.5
MD02G1210400 Malus domestica HOM05D007090 ORTHO05D008993 2.9e-29 133.3 273 45.8
RcHm_v2.0_Chr1g0349121 Rosa chinensis HOM05D007090 ORTHO05D008993 2.9e-29 133.3 261 54.4
Eucgr.E01513 Eucalyptus grandis HOM05D007090 ORTHO05D008993 3.8e-29 132.9 278 39.2
TPR.G4946 Trifolium pratense HOM05D007090 ORTHO05D008993 1.5e-28 131.0 264 45.1
Atru.chr5.252 Acer truncatum HOM05D007090 ORTHO05D008993 1.9e-28 130.6 278 51.1
Phvul.010G072500 Phaseolus vulgaris HOM05D007090 ORTHO05D008993 2.5e-28 130.2 273 39.2
PGSC0003DMG400025974 Solanum tuberosum HOM05D007090 ORTHO05D008993 2.5e-28 130.2 288 39.9
Lalb_Chr12g0207911 Lupinus albus HOM05D007090 ORTHO05D008993 4.2e-28 129.4 273 36.3
FvH4_7g11100 Fragaria vesca HOM05D007090 ORTHO05D008993 5.5e-28 129.0 262 48.1
ECA234G0545 Erigeron canadensis HOM05D007090 ORTHO05D008993 2.1e-27 127.1 240 42.1
arahy.Tifrunner.gnm1.ann1.KQM8V4 Arachis hypogaea HOM05D007090 ORTHO05D008993 3.6e-27 126.3 244 46.3
Duzib138G0673 Durio zibethinus HOM05D007090 ORTHO05D008993 1.4e-26 124.4 272 38.6
SGA_v2.0_scaffold11G05536 Striga asiatica HOM05D007090 ORTHO05D008993 4.0e-26 122.9 265 34.3
Gorai.007G089100 Gossypium raimondii HOM05D007090 ORTHO05D008993 6.8e-26 122.1 262 45.8
FAN06G0781 Fragaria x ananassa HOM05D007090 ORTHO05D008993 8.9e-26 121.7 270 46.7
FAN10G1641 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.5e-25 120.9 270 45.9
Ah.08g212650 Amaranthus hybridus HOM05D007090 ORTHO05D008993 2.6e-25 120.2 276 42.0
Thhalv10028898m.g Eutrema salsugineum HOM05D007090 ORTHO05D008993 2.6e-25 120.2 265 39.6
EL10Ac1g00840 Beta vulgaris HOM05D007090 ORTHO05D008993 3.4e-25 119.8 121 55.4
FAN06G2008 Fragaria x ananassa HOM05D007090 ORTHO05D008993 4.4e-25 119.4 270 50.7
Sp6g00210 Schrenkiella parvula HOM05D007090 ORTHO05D008993 7.5e-25 118.6 269 37.2
THA.LOC104803743 Tarenaya hassleriana HOM05D007090 ORTHO05D008993 7.5e-25 118.6 271 34.3
Aa31LG5G170 Aethionema arabicum HOM05D007090 ORTHO05D008993 9.8e-25 118.2 275 34.2
Aqoxy5G03901 Aquilegia oxysepala HOM05D007090 ORTHO05D008993 9.8e-25 118.2 245 49.8
CsaV3_6G008990 Cucumis sativus L. HOM05D007090 ORTHO05D008993 2.2e-24 117.1 277 34.7
unitig_748.g7116 Utricularia gibba HOM05D007090 ORTHO05D008993 4.9e-24 115.9 267 34.8
ATR0317G013 Amborella trichopoda HOM05D007090 ORTHO05D008993 4.1e-23 112.8 121 50.4
FAN03G3027 Fragaria x ananassa HOM05D007090 ORTHO05D008993 5.9e-22 109.0 80 61.2
AL6G53360 Arabidopsis lyrata HOM05D007090 ORTHO05D008993 7.8e-22 108.6 268 33.2
FAN10G4025 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.3e-21 107.8 118 53.4
ClCG06G002820 Citrullus lanatus HOM05D007090 ORTHO05D008993 1.1e-20 104.8 306 29.1
CDE04G3442 Ceratophyllum demersum HOM05D007090 ORTHO05D008993 4.3e-20 102.8 258 32.9
Os04g0534300 Oryza sativa ssp. japonica HOM05D007090 ORTHO05D008993 9.5e-20 101.7 251 41.4
AT1G73440 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 2.8e-19 100.1 266 39.8
BcaB01g02215 Brassica carinata HOM05D007090 ORTHO05D008993 6.1e-19 99.0 263 43.0
FAN01G0616 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.4e-18 97.8 328 36.6
Carub.0006s3709 Capsella rubella HOM05D007090 ORTHO05D008993 1.8e-18 97.4 255 34.9
Eucgr.E01517 Eucalyptus grandis HOM05D007090 ORTHO05D008993 1.8e-18 97.4 57 71.9
MELO3C022245.2 Cucumis melo HOM05D007090 ORTHO05D008993 4.0e-18 96.3 259 34.7
Sed0010456 Sechium edule HOM05D007090 ORTHO05D008993 6.8e-18 95.5 235 37.9
Cpa.g.sc49.155 Carica papaya HOM05D007090 ORTHO05D008993 1.2e-17 94.7 55 70.9
CARHR248180 Cardamine hirsuta HOM05D007090 ORTHO05D008993 2.6e-17 93.6 260 43.5
Actinidia12185 Actinidia chinensis HOM05D007090 ORTHO05D008993 4.4e-17 92.8 104 56.7
A09p00730 Brassica napus HOM05D007090 ORTHO05D008993 6.4e-16 89.0 266 42.1
BcaC04g24200 Brassica carinata HOM05D007090 ORTHO05D008993 8.3e-16 88.6 265 45.7
BolC9t52948H Brassica oleracea HOM05D007090 ORTHO05D008993 8.3e-16 88.6 265 44.5
C09p00130 Brassica napus HOM05D007090 ORTHO05D008993 1.4e-15 87.8 265 43.0
BraA09t35687Z Brassica rapa HOM05D007090 ORTHO05D008993 1.4e-15 87.8 265 43.0
ECA234G4391 Erigeron canadensis HOM05D007090 ORTHO05D008993 5.0e-13 79.3 118 44.9
Gohir.A11G078900 Gossypium hirsutum HOM05D007090 ORTHO05D008993 2.1e-11 73.9 203 36.5
Lj7P535T24 Lonicera japonica HOM05D007090 ORTHO05D008993 4.4e-09 66.2 71 56.3
Pp3c13_5390 Physcomitrium patens HOM05D007090 ORTHO05D008993 2.2e-08 63.9 128 33.6
AT4G00140 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 2.4e-07 60.5 45 57.8
CBR_g23736 Chara braunii HOM05D007090 ORTHO05D008993 3.2e-07 60.1 152 30.3
SMO137G0209 Selaginella moellendorffii HOM05D007090 ORTHO05D008993 2.7e-06 57.0 117 32.5
SEGI_04858 Sequoiadendron giganteum HOM05D007090 ORTHO05D008993 4.6e-06 56.2 40 60.0


User provided reference genes

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