Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44028 Davidia involucrata HOM05D005587 ORTHO05D007287 7.5e-46 186.8 93 100.0
Dinv44029 Davidia involucrata HOM05D005587 ORTHO05D007287 1.3e-26 122.9 71 88.7
Actinidia21616 Actinidia chinensis HOM05D005587 ORTHO05D007287 1.1e-15 86.7 72 62.5
CSS0020453 Camellia sinensis var. sinensis HOM05D005587 ORTHO05D007287 4.0e-15 84.7 72 59.7
CSS0020891 Camellia sinensis var. sinensis HOM05D005587 ORTHO05D007287 5.2e-15 84.3 72 59.7
vmacro21076 Vaccinium macrocarpon HOM05D005587 ORTHO05D007287 8.9e-15 83.6 71 62.0
Rhsim01G0143000 Rhododendron simsii HOM05D005587 ORTHO05D007287 6.4e-13 77.4 72 59.7
TAR375G0462 Trochodendron aralioides HOM05D005587 ORTHO05D007287 1.1e-12 76.6 72 54.2
Ciclev10014906m.g Citrus clementina HOM05D005587 ORTHO05D007287 2.1e-11 72.4 72 48.6
Duzib168G0929 Durio zibethinus HOM05D005587 ORTHO05D007287 2.7e-11 72.0 72 50.0
Sabra14G0040000 Salix brachista HOM05D005587 ORTHO05D007287 1.0e-10 70.1 72 52.8
Nn1g00683 Nelumbo nucifera HOM05D005587 ORTHO05D007287 1.3e-10 69.7 64 59.4
RcHm_v2.0_Chr1g0344321 Rosa chinensis HOM05D005587 ORTHO05D007287 1.7e-10 69.3 71 50.7
Thecc.09G197000 Theobroma cacao HOM05D005587 ORTHO05D007287 2.3e-10 68.9 70 51.4
FvH4_7g08900 Fragaria vesca HOM05D005587 ORTHO05D007287 6.6e-10 67.4 71 49.3
FAN06G5081 Fragaria x ananassa HOM05D005587 ORTHO05D007287 6.6e-10 67.4 71 49.3
FAN03G1924 Fragaria x ananassa HOM05D005587 ORTHO05D007287 8.7e-10 67.0 71 49.3
Oeu018164.2 Olea europaea HOM05D005587 ORTHO05D007287 8.7e-10 67.0 68 51.5
COL.COLO4_23407 Corchorus olitorius HOM05D005587 ORTHO05D007287 1.1e-09 66.6 81 44.4
Potri.014G053200 Populus trichocarpa HOM05D005587 ORTHO05D007287 1.1e-09 66.6 68 51.5
Eucgr.E01703 Eucalyptus grandis HOM05D005587 ORTHO05D007287 1.5e-09 66.2 71 49.3
Gorai.003G062300 Gossypium raimondii HOM05D005587 ORTHO05D007287 1.9e-09 65.9 66 54.5
Lj5g0020653 Lotus japonicus HOM05D005587 ORTHO05D007287 1.9e-09 65.9 73 50.7
Gohir.A02G117800 Gossypium hirsutum HOM05D005587 ORTHO05D007287 2.5e-09 65.5 66 54.5
AUR62013785 Chenopodium quinoa HOM05D005587 ORTHO05D007287 3.3e-09 65.1 71 49.3
Gohir.D03G058500 Gossypium hirsutum HOM05D005587 ORTHO05D007287 3.3e-09 65.1 66 54.5
Lj9A550G69 Lonicera japonica HOM05D005587 ORTHO05D007287 3.3e-09 65.1 72 51.4
arahy.Tifrunner.gnm1.ann1.5U4ES3 Arachis hypogaea HOM05D005587 ORTHO05D007287 4.3e-09 64.7 66 48.5
Lj4g0023083 Lotus japonicus HOM05D005587 ORTHO05D007287 4.3e-09 64.7 73 50.7
VMungo0720G2234 Vigna mungo HOM05D005587 ORTHO05D007287 4.3e-09 64.7 75 45.3
MD02G1223000 Malus domestica HOM05D005587 ORTHO05D007287 5.6e-09 64.3 72 47.2
DCAR_025030 Daucus carota HOM05D005587 ORTHO05D007287 7.3e-09 63.9 71 46.5
QL04p026316 Quercus lobata HOM05D005587 ORTHO05D007287 7.3e-09 63.9 68 51.5
FAN10G2519 Fragaria x ananassa HOM05D005587 ORTHO05D007287 1.3e-08 63.2 71 46.5
FAN10G3974 Fragaria x ananassa HOM05D005587 ORTHO05D007287 1.3e-08 63.2 71 46.5
Glyma.08G098700 Glycine max HOM05D005587 ORTHO05D007287 2.1e-08 62.4 73 45.2
SGA_v2.0_scaffold77G25257 Striga asiatica HOM05D005587 ORTHO05D007287 2.1e-08 62.4 64 50.0
Aqoxy5G01488 Aquilegia oxysepala HOM05D005587 ORTHO05D007287 6.2e-08 60.8 73 47.9
FAN01G1806 Fragaria x ananassa HOM05D005587 ORTHO05D007287 6.2e-08 60.8 70 45.7
SGA_v2.0_scaffold95G28723 Striga asiatica HOM05D005587 ORTHO05D007287 8.1e-08 60.5 64 51.6
AUR62023371 Chenopodium quinoa HOM05D005587 ORTHO05D007287 1.1e-07 60.1 71 47.9
Prupe.2G118200 Prunus persica HOM05D005587 ORTHO05D007287 1.1e-07 60.1 66 48.5
EL10Ac1g00718 Beta vulgaris HOM05D005587 ORTHO05D007287 2.4e-07 58.9 70 47.1
Lalb_Chr07g0187561 Lupinus albus HOM05D005587 ORTHO05D007287 2.4e-07 58.9 74 47.3
Manes.05G057700 Manihot esculenta HOM05D005587 ORTHO05D007287 2.4e-07 58.9 71 47.9
TPR.G9570 Trifolium pratense HOM05D005587 ORTHO05D007287 2.4e-07 58.9 73 47.9
TWI59G0612 Tripterygium wilfordii HOM05D005587 ORTHO05D007287 2.4e-07 58.9 68 47.1
GSVIVG01018341001 Vitis vinifera HOM05D005587 ORTHO05D007287 2.4e-07 58.9 66 50.0
Ah.05g177750 Amaranthus hybridus HOM05D005587 ORTHO05D007287 4.0e-07 58.2 66 45.5
Ca_19146_v3 Cicer arietinum L. HOM05D005587 ORTHO05D007287 4.0e-07 58.2 70 44.3
PGSC0003DMG402001720 Solanum tuberosum HOM05D005587 ORTHO05D007287 5.3e-07 57.8 64 54.7
Nitab4.5_0005064g0010 Nicotiana tabacum HOM05D005587 ORTHO05D007287 6.9e-07 57.4 64 53.1
ECA236G1181 Erigeron canadensis HOM05D005587 ORTHO05D007287 9.0e-07 57.0 67 53.7
Solyc01g088650.4 Solanum lycopersicum HOM05D005587 ORTHO05D007287 9.0e-07 57.0 64 53.1
Lsat_1_v5_gn_3_39780 Lactuca sativa HOM05D005587 ORTHO05D007287 1.2e-06 56.6 66 47.0
Medtr5g077540 Medicago truncatula HOM05D005587 ORTHO05D007287 1.2e-06 56.6 73 45.2
Migut.N01719 Erythranthe guttata HOM05D005587 ORTHO05D007287 3.4e-06 55.1 66 47.0
CANSAT78G1032 Cannabis sativa HOM05D005587 ORTHO05D007287 4.4e-06 54.7 66 42.4
Cpa.g.sc50.144 Carica papaya HOM05D005587 ORTHO05D007287 5.8e-06 54.3 68 39.7
CiPaw.13G083300 Carya illinoinensis HOM05D005587 ORTHO05D007287 5.8e-06 54.3 62 50.0
Sopen01g035500 Solanum pennellii HOM05D005587 ORTHO05D007287 7.6e-06 53.9 64 51.6
Actinidia12629 Actinidia chinensis HOM05D005587 ORTHO05D007287 9.9e-06 53.5 49 59.2
Cc02_g25560 Coffea canephora HOM05D005587 ORTHO05D007287 9.9e-06 53.5 66 45.5
PSO063G5522 Papaver somniferum HOM05D005587 ORTHO05D007287 9.9e-06 53.5 72 44.4


User provided reference genes

Program Settings