Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 1.6e-200 702.6 370 100.0
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.1e-172 610.1 371 83.6
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 4.2e-172 608.2 371 83.3
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 5.1e-162 574.7 370 78.9
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 3.6e-160 568.5 370 78.9
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 4.8e-160 568.2 370 78.6
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 8.1e-160 567.4 369 78.3
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 1.4e-159 566.6 372 80.1
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.2e-158 563.5 380 77.9
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 2.0e-158 562.8 369 77.5
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 2.6e-158 562.4 379 77.8
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 5.8e-158 561.2 372 78.5
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 9.9e-158 560.5 372 78.5
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 2.2e-157 559.3 373 78.0
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 3.8e-157 558.5 371 78.2
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 6.4e-157 557.8 374 78.1
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 3.2e-156 555.4 372 78.2
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 7.1e-156 554.3 376 77.4
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 1.6e-155 553.1 354 79.9
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 6.0e-155 551.2 376 76.6
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 1.8e-154 549.7 377 76.9
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 8.7e-154 547.4 372 76.1
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 1.5e-153 546.6 359 79.7
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 1.9e-153 546.2 385 77.4
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 2.5e-153 545.8 382 77.0
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 4.3e-153 545.0 377 76.1
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 2.8e-152 542.3 365 78.1
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 2.8e-152 542.3 377 75.1
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 2.4e-151 539.3 356 78.9
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 3.1e-151 538.9 376 74.5
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 3.4e-150 535.4 398 74.1
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 3.4e-150 535.4 377 74.0
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 3.4e-150 535.4 381 76.1
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 7.6e-150 534.3 328 83.8
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 2.2e-149 532.7 375 75.2
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 2.2e-149 532.7 372 75.5
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 3.8e-149 531.9 324 83.3
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 1.1e-148 530.4 330 81.8
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 1.4e-148 530.0 334 81.1
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 1.4e-148 530.0 370 74.1
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 2.5e-148 529.3 361 76.7
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 5.5e-148 528.1 371 74.9
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 2.1e-147 526.2 372 72.3
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 2.1e-147 526.2 370 73.8
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 2.7e-147 525.8 387 73.9
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 2.7e-147 525.8 383 72.6
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 1.0e-146 523.9 376 75.0
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 1.0e-146 523.9 376 75.0
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 1.8e-146 523.1 322 83.2
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 3.9e-146 521.9 380 74.2
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 5.1e-146 521.5 362 76.0
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 6.7e-146 521.2 376 74.5
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 8.7e-146 520.8 375 74.7
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 8.7e-146 520.8 382 73.0
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 8.7e-146 520.8 325 80.9
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 2.5e-145 519.2 377 74.0
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 2.5e-145 519.2 377 74.0
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 3.3e-145 518.8 383 76.5
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 5.7e-145 518.1 328 82.0
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 5.7e-145 518.1 373 75.9
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 7.4e-145 517.7 328 81.7
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.3e-144 516.9 331 80.7
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 1.3e-144 516.9 373 74.0
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 1.3e-144 516.9 327 81.3
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 2.8e-144 515.8 372 75.0
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 2.8e-144 515.8 333 81.1
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 6.2e-144 514.6 370 74.6
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 2.4e-143 512.7 373 74.0
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 1.5e-142 510.0 374 74.3
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 1.5e-142 510.0 381 72.7
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 7.6e-142 507.7 329 80.5
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 1.0e-141 507.3 371 72.5
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 1.0e-141 507.3 408 66.9
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 1.3e-141 506.9 370 77.3
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 8.4e-141 504.2 329 79.3
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 1.6e-139 500.0 361 74.0
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 1.6e-139 500.0 342 76.0
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 1.0e-138 497.3 330 78.2
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 1.3e-138 496.9 356 73.9
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 1.3e-138 496.9 329 78.1
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 2.3e-138 496.1 333 79.0
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 6.7e-138 494.6 370 75.4
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.9e-137 493.0 333 78.7
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 8.2e-136 487.6 386 67.6
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.4e-135 486.9 353 71.7
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 6.9e-135 484.6 382 68.6
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 1.2e-134 483.8 373 69.4
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.5e-134 481.9 328 77.7
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 1.0e-133 480.7 368 70.9
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.3e-133 480.3 367 69.8
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 2.2e-133 479.6 329 75.1
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 2.2e-133 479.6 374 69.5
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 3.8e-133 478.8 277 87.4
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 2.5e-132 476.1 337 73.0
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 1.6e-131 473.4 280 84.3
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 3.6e-131 472.2 338 72.8
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 4.6e-131 471.9 328 75.3
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 1.5e-129 466.8 325 76.3
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 1.2e-126 457.2 328 73.8
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 3.9e-122 442.2 281 82.2
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 6.7e-122 441.4 334 70.4
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 7.2e-116 421.4 335 68.7
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 1.1e-113 414.1 288 74.0
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 1.4e-111 407.1 283 72.8
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 2.0e-110 403.3 290 70.3
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 1.4e-106 390.6 324 63.0
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 2.3e-106 389.8 233 85.4
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 3.4e-105 386.0 285 68.1
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 3.1e-103 379.4 206 96.6
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.6e-99 367.1 308 62.7
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 1.7e-93 347.1 269 70.3
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 2.9e-93 346.3 206 84.0
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 7.8e-86 321.6 281 59.4
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 2.3e-82 310.1 262 58.4
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 1.1e-79 301.2 278 60.4
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 2.4e-79 300.1 235 69.4
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 6.0e-78 295.4 259 57.5
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 3.3e-76 289.7 235 66.4
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 1.6e-67 260.8 189 70.4
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 1.1e-63 248.1 187 75.4
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 5.4e-63 245.7 156 82.1
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 9.6e-60 235.0 186 66.1
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 2.6e-57 226.9 182 67.0
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 6.4e-56 222.2 182 66.5
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 4.3e-52 209.5 146 69.9
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 2.2e-48 197.2 116 85.3
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 1.1e-47 194.9 109 89.0
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 1.0e-45 188.3 136 74.3
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 7.9e-38 162.2 114 69.3
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 1.6e-30 137.9 245 35.1
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 1.5e-28 131.3 240 35.4
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 3.4e-25 120.2 188 44.7
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 5.0e-24 116.3 75 77.3
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.4e-23 114.8 156 44.9
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 7.2e-23 112.5 82 61.0
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 9.3e-23 112.1 164 38.4
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 9.3e-23 112.1 241 31.1
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 6.1e-22 109.4 113 59.3
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 2.2e-19 100.9 66 75.8
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 3.7e-19 100.1 50 98.0


User provided reference genes

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