Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 0.0e+00 1718.4 882 100.0
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1373.6 922 77.7
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1335.5 923 76.2
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 0.0e+00 1329.3 922 76.2
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 0.0e+00 1307.4 936 73.8
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 0.0e+00 1301.2 930 72.8
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 0.0e+00 1281.2 923 73.6
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 0.0e+00 1280.0 854 80.1
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 0.0e+00 1275.4 932 73.3
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 0.0e+00 1273.1 920 72.7
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 0.0e+00 1265.4 892 75.3
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 0.0e+00 1248.0 893 73.8
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 0.0e+00 1233.8 934 70.6
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 0.0e+00 1228.8 926 69.9
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 0.0e+00 1226.1 930 68.3
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1218.8 929 68.7
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 0.0e+00 1216.4 929 67.8
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 0.0e+00 1215.7 929 68.6
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 0.0e+00 1215.7 931 69.5
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 0.0e+00 1214.1 933 70.5
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1209.9 929 68.6
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1208.7 929 68.5
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 0.0e+00 1206.8 934 69.1
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1204.5 929 68.1
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 0.0e+00 1203.0 933 67.7
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 0.0e+00 1199.9 933 68.7
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 0.0e+00 1199.9 935 68.6
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1199.5 929 68.1
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 0.0e+00 1190.6 927 67.4
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1187.9 919 67.9
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 0.0e+00 1186.0 948 67.2
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1184.5 929 67.4
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 0.0e+00 1182.2 937 67.4
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 0.0e+00 1173.7 933 67.1
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 0.0e+00 1170.6 933 67.0
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 0.0e+00 1161.7 924 66.2
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 0.0e+00 1159.4 948 67.6
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 0.0e+00 1159.4 933 66.7
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 0.0e+00 1151.0 932 66.1
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 0.0e+00 1144.4 934 66.3
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 0.0e+00 1139.8 919 65.4
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 0.0e+00 1139.4 916 66.2
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1134.0 922 65.8
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 0.0e+00 1133.2 934 65.0
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1130.5 922 65.3
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 0.0e+00 1130.2 932 64.4
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 0.0e+00 1126.7 933 64.8
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 0.0e+00 1126.7 922 65.1
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1120.9 918 65.0
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 0.0e+00 1119.0 916 65.8
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1119.0 918 64.6
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 0.0e+00 1118.6 918 64.7
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 0.0e+00 1118.2 928 66.4
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 0.0e+00 1110.5 928 63.8
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1105.9 936 62.6
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 0.0e+00 1105.1 936 63.7
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 0.0e+00 1103.2 932 64.4
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 0.0e+00 1096.6 929 63.8
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 0.0e+00 1096.3 933 63.8
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 0.0e+00 1095.1 936 62.6
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 0.0e+00 1093.2 934 63.4
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 0.0e+00 1088.6 936 62.3
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 0.0e+00 1088.6 928 63.1
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1087.8 933 62.6
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1083.9 931 62.8
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 0.0e+00 1080.9 942 61.1
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1080.9 934 62.7
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 0.0e+00 1079.3 937 61.4
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 0.0e+00 1078.2 925 62.6
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 0.0e+00 1077.4 906 64.1
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1076.2 931 62.8
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 1.2e-311 1073.2 931 62.1
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 5.4e-311 1070.8 922 62.4
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 2.7e-310 1068.5 933 62.9
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 3.5e-310 1068.1 938 61.0
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 1.7e-309 1065.8 933 61.7
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 2.3e-309 1065.4 936 62.4
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 7.3e-308 1060.4 932 60.9
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 1.6e-307 1059.3 933 60.6
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 1.6e-307 1059.3 932 61.1
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 4.7e-307 1057.7 935 60.6
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 2.3e-306 1055.4 937 61.4
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 3.1e-306 1055.0 909 62.3
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 4.0e-306 1054.7 926 61.3
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 1.2e-305 1053.1 925 60.9
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 1.4e-303 1046.2 929 61.6
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 2.1e-302 1042.3 932 60.9
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 8.6e-301 1036.9 906 62.3
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 5.6e-300 1034.2 927 60.6
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 1.4e-298 1029.6 935 61.5
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 4.0e-298 1028.1 934 59.6
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 6.8e-298 1027.3 938 61.3
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 6.0e-294 1014.2 939 60.3
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 1.1e-292 1010.0 896 62.4
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 8.9e-290 1000.3 931 59.7
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 1.1e-287 993.4 933 58.7
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 2.4e-287 992.3 986 57.0
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 5.4e-287 991.1 932 58.6
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 2.7e-286 988.8 669 75.6
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 2.8e-283 978.8 927 58.9
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 4.8e-283 978.0 937 58.0
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 1.8e-282 976.1 931 58.1
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 9.0e-282 973.8 666 73.3
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 1.5e-281 973.0 937 58.6
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 5.8e-281 971.1 979 56.4
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 1.7e-280 969.5 942 58.5
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 5.4e-279 964.5 943 57.8
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 2.7e-278 962.2 926 57.9
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 1.3e-275 953.4 943 57.1
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 3.1e-274 948.7 919 56.7
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 2.6e-273 945.7 943 56.8
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 3.4e-273 945.3 941 56.7
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 3.4e-273 945.3 941 56.7
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 4.5e-273 944.9 945 56.8
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 4.5e-273 944.9 945 56.8
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 9.9e-273 943.7 941 56.7
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 2.9e-272 942.2 942 56.8
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 1.4e-271 939.9 927 58.0
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 2.1e-270 936.0 946 55.5
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 4.6e-270 934.9 943 56.1
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 1.3e-269 933.3 945 56.4
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 1.6e-267 926.4 938 56.5
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 6.9e-266 921.0 922 56.3
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 9.0e-266 920.6 938 56.2
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 9.0e-266 920.6 938 56.2
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 1.5e-265 919.8 941 56.1
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 8.4e-264 914.1 941 55.7
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 1.3e-261 906.7 947 53.2
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 7.4e-260 901.0 936 54.5
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 3.1e-258 895.6 730 64.7
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 1.3e-251 873.6 937 53.8
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 1.2e-238 830.5 926 52.5
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.3e-235 820.5 916 51.2
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 1.5e-231 807.0 867 52.4
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 1.5e-228 797.0 928 49.0
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 2.6e-228 796.2 927 49.1
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 7.7e-217 758.1 913 49.6
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 1.1e-215 754.2 527 74.0
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 1.0e-205 721.1 937 45.7
SHI13447 Sapria himalayana HOM05D003460 ORTHO05D004277 1.8e-205 720.3 669 58.0
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 2.9e-171 606.7 943 41.6
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 7.1e-170 602.1 936 41.3
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 3.5e-169 599.7 924 40.8
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.3e-163 581.3 934 39.9
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 2.6e-148 530.4 917 39.7
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 8.8e-136 488.8 686 45.3
AagrBONN_evm.TU.Sc2ySwM_344.2570 Anthoceros agrestis HOM05D003460 ORTHO05D004277 6.1e-129 466.1 908 35.5
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 4.1e-117 426.8 394 56.3
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 2.7e-105 387.5 513 45.2
Psat0ss3759g0200 Pisum sativum HOM05D003460 ORTHO05D007199 4.1e-77 293.9 339 53.1
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 3.9e-75 287.3 979 30.2
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 1.2e-60 239.2 300 46.0
GSVIVG01026827001 Vitis vinifera HOM05D003460 ORTHO05D004277 6.6e-59 233.4 273 54.2
Atru.chr5.495 Acer truncatum HOM05D003460 ORTHO05D004277 1.5e-55 222.2 227 59.5
HPP92_025393 Vanilla planifolia HOM05D003460 ORTHO05D004277 2.2e-46 191.8 439 32.8
THA.LOC104827725 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 1.6e-44 185.7 264 45.1
PGSC0003DMG400000171 Solanum tuberosum HOM05D003460 ORTHO05D004277 3.7e-41 174.5 134 70.1
Atru.chr5.496 Acer truncatum HOM05D003460 ORTHO05D004277 5.5e-37 160.6 104 78.8
Psat0s3269g0120 Pisum sativum HOM05D000070 ORTHO05D006683 1.0e-30 139.8 116 62.9
TPR.G15040 Trifolium pratense HOM05D003460 ORTHO05D004277 7.9e-28 130.2 154 51.3
SHI13445 Sapria himalayana HOM05D003460 ORTHO05D004277 3.1e-24 118.2 147 49.7
Psat4g193320 Pisum sativum HOM05D003460 ORTHO05D004277 1.7e-22 112.5 132 53.0
Dinv43814 Davidia involucrata HOM05D003460 ORTHO05D013366 3.1e-16 91.7 105 51.4
TPR.G701 Trifolium pratense HOM05D003460 ORTHO05D030575 1.0e-14 86.7 139 41.7
VMungo1215G0982 Vigna mungo HOM05D003460 ORTHO05D004277 8.5e-14 83.6 170 34.1
Psat6g008040 Pisum sativum HOM05D003460 ORTHO05D019351 1.4e-13 82.8 78 57.7
TPR.G17917 Trifolium pratense HOM05D003460 ORTHO05D004277 7.9e-12 77.0 67 61.2
CBR_g34865 Chara braunii HOM05D003460 ORTHO05D004277 6.3e-09 67.4 90 42.2
Psat0s5438g0040 Pisum sativum HOM05D003438 ORTHO05D014892 8.2e-09 67.0 49 69.4


User provided reference genes

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