Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 4.2e-78 294.7 153 100.0
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 2.8e-58 228.8 149 81.2
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 4.4e-43 178.3 147 66.7
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 1.4e-41 173.3 164 62.2
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 4.5e-40 168.3 144 63.9
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 1.0e-39 167.2 139 64.7
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.0e-39 167.2 136 65.4
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 2.1e-37 159.5 149 63.1
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 3.6e-37 158.7 129 64.3
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 8.9e-36 154.1 150 58.0
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 2.6e-35 152.5 145 59.3
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 5.7e-35 151.4 137 59.9
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 5.7e-35 151.4 153 54.9
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 1.3e-34 150.2 127 61.4
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 4.9e-34 148.3 126 65.1
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 1.1e-33 147.1 149 55.0
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 1.4e-33 146.7 162 53.1
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 1.4e-33 146.7 147 54.4
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 5.4e-33 144.8 152 54.6
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 9.2e-33 144.1 132 56.8
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.2e-32 143.7 140 57.9
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 3.5e-32 142.1 191 47.6
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 3.5e-32 142.1 135 60.0
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 2.3e-31 139.4 223 40.8
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 3.0e-31 139.0 147 54.4
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 3.0e-31 139.0 153 52.9
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 1.5e-30 136.7 143 55.2
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 1.9e-30 136.3 149 53.0
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 1.9e-30 136.3 140 55.7
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 2.5e-30 136.0 132 53.0
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 3.3e-30 135.6 149 52.3
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 5.6e-30 134.8 132 53.0
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 1.2e-29 133.7 159 49.7
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 1.6e-29 133.3 140 54.3
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 3.6e-29 132.1 132 52.3
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 3.1e-28 129.0 160 51.2
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 8.9e-28 127.5 123 56.9
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 2.0e-27 126.3 132 50.0
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 5.8e-27 124.8 124 58.1
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 5.8e-27 124.8 151 49.0
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 5.8e-27 124.8 168 48.2
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 5.8e-27 124.8 150 53.3
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 9.8e-27 124.0 143 46.2
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 9.8e-27 124.0 134 51.5
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 1.7e-26 123.2 145 47.6
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 3.7e-26 122.1 134 50.7
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 4.9e-26 121.7 123 55.3
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 6.4e-26 121.3 139 50.4
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 6.4e-26 121.3 154 45.5
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 1.1e-25 120.6 138 52.2
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.9e-25 119.8 137 52.6
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 1.9e-25 119.8 134 54.5
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 2.4e-25 119.4 128 51.6
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 2.4e-25 119.4 134 53.7
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 2.4e-25 119.4 134 53.7
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 2.4e-25 119.4 150 50.0
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 2.4e-25 119.4 129 49.6
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 2.4e-25 119.4 138 51.4
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 4.1e-25 118.6 148 45.9
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 4.1e-25 118.6 140 49.3
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 5.4e-25 118.2 131 49.6
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 7.0e-25 117.9 137 52.6
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 9.2e-25 117.5 134 53.0
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 9.2e-25 117.5 134 53.0
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 1.2e-24 117.1 150 48.7
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 1.2e-24 117.1 135 48.1
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 1.6e-24 116.7 141 51.1
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 2.0e-24 116.3 147 46.9
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 2.7e-24 115.9 130 48.5
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 2.7e-24 115.9 139 45.3
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 4.6e-24 115.2 144 50.7
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 4.6e-24 115.2 140 50.0
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 7.8e-24 114.4 161 48.4
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 1.7e-23 113.2 149 46.3
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 2.3e-23 112.8 139 46.8
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 3.9e-23 112.1 122 55.7
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 5.0e-23 111.7 149 47.0
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 5.0e-23 111.7 139 46.8
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 6.6e-23 111.3 135 48.1
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 8.6e-23 110.9 134 47.0
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 4.3e-22 108.6 174 43.1
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 5.6e-22 108.2 138 44.2
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 9.5e-22 107.5 142 49.3
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 1.6e-21 106.7 121 52.9
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 2.8e-21 105.9 148 42.6
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 4.7e-21 105.1 121 51.2
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 1.1e-20 104.0 121 51.2
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 3.1e-20 102.4 144 46.5
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 3.1e-20 102.4 134 46.3
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 6.8e-20 101.3 139 45.3
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 8.9e-20 100.9 137 45.3
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 1.2e-19 100.5 153 41.8
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 5.8e-19 98.2 137 43.8
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 7.5e-19 97.8 155 41.9
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 1.3e-18 97.1 139 41.7
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 1.7e-18 96.7 221 36.7
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 3.7e-18 95.5 123 48.8
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 4.1e-17 92.0 122 50.8
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 7.1e-17 91.3 139 39.6
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 1.2e-16 90.5 123 39.8
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 2.1e-16 89.7 115 45.2
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 3.5e-16 89.0 129 43.4
CSS0003041 Camellia sinensis var. sinensis HOM05D006065 ORTHO05D007672 1.0e-15 87.4 182 38.5
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 1.0e-15 87.4 102 54.9
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.3e-15 87.0 141 39.7
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 1.3e-15 87.0 139 39.6
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 1.7e-15 86.7 139 39.6
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 1.5e-14 83.6 123 39.8
TAR375G0974 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.2e-13 80.5 82 54.9
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 1.6e-13 80.1 148 36.5
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 1.6e-13 80.1 148 36.5
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 1.6e-13 80.1 148 36.5
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 4.4e-11 72.0 144 34.0
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 9.9e-11 70.9 155 32.3
SEGI_06767 Sequoiadendron giganteum HOM05D006065 ORTHO05D007672 1.7e-10 70.1 155 32.3
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 2.2e-10 69.7 149 28.2
Os04g0558500 Oryza sativa ssp. japonica HOM05D006065 ORTHO05D007672 1.4e-09 67.0 131 30.5
AUR62004346 Chenopodium quinoa HOM05D006065 ORTHO05D007672 2.4e-09 66.2 91 40.7
CDE02G4271 Ceratophyllum demersum HOM05D000667 ORTHO05D009057 5.4e-09 65.1 65 50.8
Potri.002G159100 Populus trichocarpa HOM05D006065 ORTHO05D007672 9.2e-09 64.3 77 49.4
AUR62022552 Chenopodium quinoa HOM05D006065 ORTHO05D007672 1.6e-08 63.5 90 43.3
MELO3C006115.2 Cucumis melo HOM05D006065 ORTHO05D007672 1.3e-07 60.5 93 41.9
Zm00001eb429300 Zea mays HOM05D006065 ORTHO05D007672 2.3e-07 59.7 133 26.3
MD01G1057900 Malus domestica HOM05D006065 ORTHO05D007672 6.6e-07 58.2 59 57.6


User provided reference genes

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