Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 0.0e+00 1382.9 672 100.0
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 1.7e-293 1012.3 653 75.7
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 9.8e-289 996.5 651 75.7
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.3e-288 996.1 654 75.1
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 3.4e-281 971.5 655 72.8
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 2.4e-279 965.3 664 72.6
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 1.2e-278 963.0 659 72.2
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 4.6e-278 961.1 652 73.3
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 1.0e-277 959.9 651 73.0
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 1.5e-276 956.1 655 72.2
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 7.3e-276 953.7 653 72.0
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 2.4e-274 948.7 644 71.6
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 3.1e-274 948.3 654 71.6
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 3.1e-274 948.3 642 73.7
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 3.1e-274 948.3 644 71.3
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.5e-273 946.0 644 71.1
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 3.4e-273 944.9 661 70.7
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 4.4e-273 944.5 656 71.3
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 1.7e-272 942.6 651 72.7
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 2.2e-272 942.2 660 70.2
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 4.9e-272 941.0 659 69.2
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 8.4e-272 940.3 651 71.0
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 1.9e-271 939.1 656 70.7
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 2.4e-271 938.7 642 72.0
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 2.4e-271 938.7 648 72.1
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 1.6e-270 936.0 701 68.6
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 4.6e-270 934.5 650 70.9
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 1.3e-269 932.9 652 71.6
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 2.3e-269 932.2 652 69.9
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.1e-268 929.9 682 67.4
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 2.5e-268 928.7 657 70.0
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.3e-268 928.3 671 68.4
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 9.6e-268 926.8 653 70.3
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 1.3e-267 926.4 644 72.7
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 1.3e-267 926.4 677 68.8
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 2.8e-267 925.2 654 69.0
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 3.6e-267 924.9 656 68.9
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 2.4e-266 922.2 656 69.4
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 1.5e-265 919.5 657 69.4
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.5e-265 919.5 652 70.4
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 4.4e-265 917.9 651 69.1
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 1.3e-264 916.4 653 69.5
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 4.9e-264 914.4 668 67.8
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 2.4e-263 912.1 650 70.2
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 3.2e-263 911.8 656 67.7
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 4.2e-263 911.4 668 67.7
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 1.6e-262 909.4 682 67.2
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 4.6e-262 907.9 661 67.9
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 6.0e-262 907.5 657 68.0
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 3.1e-258 895.2 615 70.6
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 4.0e-258 894.8 652 68.7
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 6.9e-258 894.0 671 66.9
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 9.0e-258 893.6 652 68.9
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 1.2e-257 893.3 644 69.1
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 9.9e-257 890.2 659 65.6
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.4e-255 886.3 666 66.5
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.4e-255 886.3 666 66.5
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 4.2e-255 884.8 654 66.8
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 2.1e-254 882.5 656 66.3
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 2.5e-252 875.5 653 66.8
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 1.3e-251 873.2 651 65.7
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 9.0e-250 867.1 652 65.8
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 4.5e-249 864.8 653 66.9
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 5.8e-249 864.4 647 67.5
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 1.9e-247 859.4 666 65.2
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 5.5e-247 857.8 656 64.5
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 7.1e-247 857.4 652 66.0
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 9.3e-247 857.1 655 64.7
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 1.8e-245 852.8 656 64.5
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 2.3e-245 852.4 655 65.6
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 1.1e-244 850.1 645 66.5
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 2.5e-244 849.0 645 66.0
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 2.5e-244 849.0 644 65.5
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 9.6e-244 847.0 654 64.2
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 1.6e-243 846.3 645 65.9
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 2.1e-243 845.9 649 64.4
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 1.1e-242 843.6 666 64.9
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 4.1e-242 841.6 661 64.4
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 1.5e-241 839.7 652 63.3
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 2.0e-241 839.3 654 64.8
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 2.2e-240 835.9 651 63.7
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 6.1e-238 827.8 597 67.8
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 2.4e-234 815.8 499 79.2
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.9e-231 806.2 650 62.0
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 5.5e-223 778.1 656 60.8
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 1.2e-222 776.9 657 59.2
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 1.0e-221 773.9 575 67.8
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 6.7e-213 744.6 658 58.2
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 7.0e-210 734.6 618 59.5
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 1.8e-205 719.9 463 74.9
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 2.4e-186 656.4 636 53.1
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 4.6e-185 652.1 658 53.2
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 1.8e-181 640.2 632 52.8
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 2.7e-177 626.3 621 54.1
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 8.6e-168 594.7 513 58.9
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 2.5e-167 593.2 358 77.9
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 9.5e-167 591.3 440 66.1
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 2.8e-150 536.6 335 77.9
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 6.2e-150 535.4 333 76.3
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 4.6e-129 466.1 484 49.8
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 2.0e-116 424.1 415 54.7
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 5.7e-87 326.2 266 60.9
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 2.7e-76 290.8 195 73.3
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 1.1e-74 285.4 175 72.0
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 3.0e-67 260.8 204 66.7
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 3.3e-58 230.7 153 72.5
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 4.7e-57 226.9 189 58.7
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 6.8e-56 223.0 185 64.3
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 3.4e-55 220.7 140 75.0
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 4.6e-52 210.3 147 71.4
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 1.7e-38 165.2 183 47.5
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 1.0e-35 156.0 106 68.9
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 1.1e-32 146.0 114 66.7
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 1.7e-30 138.7 73 86.3
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 5.3e-24 117.1 64 84.4
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 4.5e-23 114.0 77 70.1


User provided reference genes

Program Settings