Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 2.7e-53 211.8 114 100.0
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 4.3e-43 177.9 113 84.1
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.4e-25 119.8 110 70.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.8e-24 114.4 98 67.3
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.2e-23 112.5 108 68.5
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 7.1e-22 107.5 105 61.0
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.5e-21 105.1 98 64.3
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.1e-19 100.1 107 57.0
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.6e-19 97.1 114 56.1
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 1.3e-18 96.7 99 60.6
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.8e-18 95.5 110 55.5
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 2.8e-18 95.5 98 57.1
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.1e-17 93.6 110 55.5
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.8e-17 92.8 110 55.5
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.8e-17 92.8 110 55.5
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.8e-17 92.8 110 55.5
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.1e-17 92.0 105 57.1
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.2e-16 90.1 77 63.6
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 2.6e-16 89.0 102 51.0
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 3.4e-16 88.6 89 64.0
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.4e-16 88.6 102 56.9
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 5.8e-16 87.8 98 59.2
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 7.6e-16 87.4 118 55.9
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 9.9e-16 87.0 99 54.5
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 9.9e-16 87.0 112 55.4
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.3e-15 86.7 98 53.1
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.2e-15 85.9 81 65.4
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.2e-15 85.9 118 54.2
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.9e-15 85.5 105 51.4
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.9e-15 85.5 84 64.3
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.8e-15 85.1 84 63.1
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 8.4e-15 84.0 104 52.9
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 8.4e-15 84.0 98 51.0
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.4e-14 83.2 115 49.6
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 1.4e-14 83.2 109 48.6
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.9e-14 82.8 103 55.3
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.9e-14 82.8 100 53.0
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.9e-14 82.8 98 55.1
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 2.4e-14 82.4 101 55.4
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.2e-14 82.0 77 64.9
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 3.2e-14 82.0 110 49.1
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 4.2e-14 81.6 115 49.6
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 4.2e-14 81.6 78 66.7
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.4e-14 81.3 103 50.5
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 5.4e-14 81.3 115 46.1
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 9.3e-14 80.5 117 51.3
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.6e-13 79.7 103 49.5
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.6e-13 79.7 103 49.5
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.1e-13 79.3 97 52.6
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.7e-13 79.0 80 61.2
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.7e-13 79.0 103 51.5
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 3.5e-13 78.6 99 54.5
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 3.5e-13 78.6 94 56.4
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.6e-13 78.2 103 50.5
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 4.6e-13 78.2 110 51.8
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 4.6e-13 78.2 98 48.0
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 4.6e-13 78.2 100 49.0
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 6.0e-13 77.8 100 49.0
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.9e-13 77.4 92 52.2
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.0e-12 77.0 103 48.5
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.0e-12 77.0 115 51.3
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.3e-12 76.6 104 47.1
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 1.8e-12 76.3 100 51.0
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.8e-12 76.3 102 49.0
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.8e-12 76.3 100 49.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.3e-12 75.9 105 51.4
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 3.0e-12 75.5 97 48.5
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 3.0e-12 75.5 97 48.5
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 3.0e-12 75.5 100 51.0
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 3.0e-12 75.5 103 48.5
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 3.9e-12 75.1 104 48.1
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 3.9e-12 75.1 104 48.1
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 3.9e-12 75.1 104 48.1
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.9e-12 75.1 97 51.5
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.9e-12 75.1 92 51.1
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 3.9e-12 75.1 97 50.5
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 3.9e-12 75.1 98 49.0
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.9e-12 75.1 114 48.2
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 5.1e-12 74.7 97 48.5
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 5.1e-12 74.7 97 48.5
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 5.1e-12 74.7 103 48.5
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 5.1e-12 74.7 112 47.3
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 5.1e-12 74.7 103 52.4
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 5.1e-12 74.7 111 49.5
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 6.7e-12 74.3 97 50.5
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 6.7e-12 74.3 100 50.0
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 8.7e-12 73.9 103 48.5
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 1.1e-11 73.6 106 50.9
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-11 73.6 104 47.1
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.1e-11 73.6 103 47.6
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.1e-11 73.6 100 49.0
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 1.1e-11 73.6 100 49.0
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.5e-11 73.2 83 57.8
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.5e-11 73.2 97 50.5
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-11 73.2 103 46.6
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 1.5e-11 73.2 100 48.0
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 1.5e-11 73.2 103 51.5
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 1.5e-11 73.2 90 54.4
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-11 72.8 103 46.6
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-11 72.8 103 46.6
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-11 72.4 103 45.6
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 2.5e-11 72.4 103 46.6
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 2.5e-11 72.4 84 56.0
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 3.3e-11 72.0 105 47.6
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 4.3e-11 71.6 94 46.8
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 4.3e-11 71.6 82 51.2
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 7.4e-11 70.9 105 50.5
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 7.4e-11 70.9 98 51.0
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 9.6e-11 70.5 98 48.0
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.6e-11 70.5 92 48.9
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 9.6e-11 70.5 100 46.0
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 9.6e-11 70.5 110 44.5
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.3e-10 70.1 99 47.5
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-10 70.1 97 46.4
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-10 70.1 97 44.3
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-10 70.1 97 44.3
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.3e-10 70.1 97 44.3
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.3e-10 70.1 115 46.1
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 1.3e-10 70.1 106 47.2
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.6e-10 69.7 98 45.9
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.6e-10 69.7 98 42.9
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 3.6e-10 68.6 65 63.1
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 3.6e-10 68.6 89 48.3
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 3.6e-10 68.6 105 45.7
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 4.8e-10 68.2 97 46.4
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.8e-10 68.2 106 45.3
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 6.2e-10 67.8 107 47.7
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 8.1e-10 67.4 90 50.0
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 1.1e-09 67.0 93 50.5
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.4e-09 66.6 105 48.6
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.8e-09 66.2 76 57.9
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.4e-09 65.9 88 52.3
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 2.4e-09 65.9 86 51.2
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 3.1e-09 65.5 102 46.1
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 4.0e-09 65.1 98 48.0
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 5.3e-09 64.7 95 47.4
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 5.3e-09 64.7 96 45.8
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 6.9e-09 64.3 97 42.3
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 6.9e-09 64.3 44 72.7
Gorai.007G092100 Gossypium raimondii HOM05D003683 ORTHO05D004143 6.9e-09 64.3 84 54.8
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 6.9e-09 64.3 115 44.3
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 9.0e-09 63.9 78 52.6
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 9.0e-09 63.9 82 52.4
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.2e-08 63.5 100 43.0
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.5e-08 63.2 78 51.3
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 1.5e-08 63.2 106 42.5
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 2.0e-08 62.8 77 50.6
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.0e-08 62.8 99 41.4
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 4.5e-08 61.6 99 43.4
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 4.5e-08 61.6 98 40.8
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 5.8e-08 61.2 98 44.9
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 5.8e-08 61.2 63 55.6
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 5.8e-08 61.2 101 44.6
Nitab4.5_0011654g0010 Nicotiana tabacum HOM05D003683 ORTHO05D004143 7.6e-08 60.8 105 41.9
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.9e-08 60.5 108 44.4
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 9.9e-08 60.5 112 42.0
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.3e-07 60.1 102 42.2
Sed0002184 Sechium edule HOM05D003683 ORTHO05D004143 1.3e-07 60.1 71 53.5
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 1.7e-07 59.7 101 41.6
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 2.2e-07 59.3 113 40.7
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 2.9e-07 58.9 74 55.4
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 4.9e-07 58.2 101 41.6
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 4.9e-07 58.2 101 40.6
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 8.4e-07 57.4 43 62.8
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 8.4e-07 57.4 43 62.8
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 8.4e-07 57.4 39 74.4
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.1e-06 57.0 102 42.2
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 1.4e-06 56.6 42 66.7
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.9e-06 56.2 93 47.3
Lsat_1_v5_gn_3_5041 Lactuca sativa HOM05D003683 ORTHO05D004143 1.9e-06 56.2 86 46.5
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.4e-06 55.8 112 40.2
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 7.1e-06 54.3 101 39.6


User provided reference genes

Program Settings