Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 6.9e-226 786.9 389 100.0
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 6.5e-192 674.1 390 85.9
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.8e-189 666.0 389 85.1
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.4e-186 655.6 389 84.1
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 3.4e-185 651.7 387 84.2
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 6.7e-181 637.5 390 82.6
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 1.9e-175 619.4 390 79.0
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 1.4e-173 613.2 391 79.3
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 1.7e-168 596.3 391 76.0
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 2.5e-167 592.4 391 77.2
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 1.8e-165 586.3 391 76.0
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 2.3e-165 585.9 390 74.6
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.7e-163 579.7 390 74.9
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 2.8e-163 578.9 390 75.1
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 3.7e-163 578.6 390 75.1
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 4.1e-162 575.1 391 72.9
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 3.5e-161 572.0 390 72.8
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 4.5e-161 571.6 391 72.4
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 7.7e-161 570.9 390 73.8
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 7.7e-161 570.9 408 71.8
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.0e-160 570.5 408 71.8
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 1.7e-160 569.7 391 74.9
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 2.9e-160 568.9 384 73.7
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 5.0e-160 568.2 386 74.9
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 7.2e-159 564.3 408 70.1
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 9.4e-159 563.9 390 73.6
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 2.7e-158 562.4 389 71.7
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 8.0e-158 560.8 389 72.2
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.4e-157 560.1 391 73.7
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 3.0e-157 558.9 390 71.8
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 3.0e-157 558.9 390 72.1
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 6.8e-157 557.8 380 73.2
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 8.8e-157 557.4 408 69.6
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 5.7e-156 554.7 391 71.4
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 2.2e-155 552.7 383 72.3
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 8.3e-155 550.8 396 70.5
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 8.3e-155 550.8 389 69.4
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 8.3e-155 550.8 391 71.1
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 1.1e-154 550.4 389 73.5
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.4e-154 550.1 366 77.0
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 2.4e-154 549.3 391 71.1
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 4.1e-154 548.5 389 70.4
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 1.2e-153 547.0 385 72.5
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.6e-153 546.6 372 73.7
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 2.7e-153 545.8 363 77.7
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 2.7e-153 545.8 390 71.3
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.7e-153 544.3 391 70.1
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.3e-152 542.7 413 67.3
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 2.3e-152 542.7 389 69.4
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.1e-151 540.4 365 73.7
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.1e-151 540.4 393 70.0
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 1.9e-151 539.7 386 71.5
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 2.1e-150 536.2 386 70.5
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 2.1e-150 536.2 389 69.7
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 3.6e-150 535.4 380 74.5
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 1.0e-149 533.9 393 69.0
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 2.3e-149 532.7 390 70.0
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 2.6e-148 529.3 424 67.9
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 3.4e-148 528.9 397 69.3
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 7.5e-148 527.7 389 69.2
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.3e-147 526.9 389 67.1
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 1.3e-147 526.9 389 68.6
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 1.7e-147 526.6 387 69.3
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 2.2e-147 526.2 389 68.6
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 1.4e-146 523.5 377 70.3
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 4.1e-146 521.9 389 68.6
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 7.0e-146 521.2 389 66.3
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 1.2e-145 520.4 390 67.4
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 5.9e-145 518.1 414 64.5
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.3e-144 516.9 399 66.7
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 8.6e-144 514.2 368 69.8
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 1.1e-143 513.8 391 67.8
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.5e-143 513.5 392 68.6
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 3.3e-143 512.3 391 68.8
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 5.6e-143 511.5 355 72.4
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 2.8e-142 509.2 366 69.9
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 1.0e-141 507.3 392 67.6
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.2e-140 503.8 390 67.9
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 7.5e-140 501.1 390 64.6
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 1.7e-139 500.0 390 64.1
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 4.6e-137 491.9 391 64.2
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 6.6e-136 488.0 390 63.1
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 2.1e-134 483.0 343 70.3
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 4.7e-134 481.9 391 62.1
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 4.7e-134 481.9 385 64.7
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 2.3e-133 479.6 375 67.2
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.2e-132 477.2 391 61.6
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 2.0e-132 476.5 390 61.5
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 4.9e-131 471.9 322 73.3
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 1.1e-130 470.7 343 69.7
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 3.2e-130 469.2 390 61.0
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 3.2e-130 469.2 391 60.6
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 3.2e-130 469.2 390 61.0
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 3.3e-127 459.1 327 70.3
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 8.3e-123 444.5 416 57.5
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 2.2e-115 419.9 389 57.6
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 1.1e-111 407.5 342 60.5
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 3.6e-110 402.5 264 74.6
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 2.7e-105 386.3 252 74.6
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.8e-101 373.6 305 63.3
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 4.2e-98 362.5 265 69.8
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 2.1e-97 360.1 384 52.3
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 4.6e-89 332.4 323 56.7
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 2.3e-88 330.1 216 77.8
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.1e-87 327.8 264 62.1
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.5e-87 326.6 202 77.2
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 5.3e-85 318.9 187 80.2
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 8.2e-78 295.0 164 86.0
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 1.1e-77 294.7 226 67.3
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 2.4e-69 266.9 271 48.0
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 1.2e-65 254.6 178 68.0
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 4.7e-65 252.7 188 62.8
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.8e-61 240.7 131 87.0
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 7.5e-55 218.8 222 49.5
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 2.7e-49 200.3 212 48.1
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 6.1e-49 199.1 114 81.6
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 3.8e-43 179.9 124 71.0
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 5.0e-43 179.5 186 51.1
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 8.8e-40 168.7 133 61.7
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 2.6e-39 167.2 132 64.4
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 9.8e-39 165.2 211 48.3
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 9.8e-39 165.2 133 60.9
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 1.6e-36 157.9 200 45.0
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 1.3e-35 154.8 243 40.7
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 5.7e-31 139.4 189 47.1
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 1.8e-29 134.4 84 72.6
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 3.2e-29 133.7 176 47.7
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 9.5e-26 122.1 63 90.5
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 2.8e-25 120.6 113 60.2
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 8.0e-25 119.0 73 79.5
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 4.4e-23 113.2 75 68.0
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 6.4e-22 109.4 109 52.3
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 6.8e-16 89.4 92 56.5
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 1.3e-14 85.1 69 60.9
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 7.8e-12 75.9 46 82.6
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 5.6e-10 69.7 46 76.1
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 6.2e-09 66.2 105 39.0


User provided reference genes

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