Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 0.0e+00 1129.8 662 100.0
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 1.4e-106 391.3 650 43.7
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 4.2e-106 389.8 778 39.8
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 9.6e-103 378.6 751 39.9
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 1.3e-99 368.2 612 44.4
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 3.5e-97 360.1 640 42.3
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 1.3e-96 358.2 494 49.4
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 6.9e-93 345.9 649 41.9
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 5.8e-92 342.8 469 50.3
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 3.8e-91 340.1 622 41.5
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 8.4e-91 339.0 505 47.1
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 4.6e-89 333.2 630 41.9
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.9e-89 332.4 608 42.8
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 7.9e-89 332.4 661 40.2
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 1.8e-88 331.3 661 40.7
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 1.2e-84 318.5 563 44.8
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.4e-84 317.0 649 40.7
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.9e-83 313.9 649 40.7
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.2e-81 308.5 652 41.1
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.7e-81 307.4 652 39.0
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 6.0e-81 306.2 610 40.8
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 6.0e-81 306.2 480 45.4
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 1.3e-80 305.1 441 48.8
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 5.1e-80 303.1 438 48.4
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 7.4e-79 299.3 611 41.1
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 7.4e-79 299.3 639 40.1
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 9.6e-79 298.9 652 41.0
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 1.9e-74 284.6 539 42.1
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 9.7e-71 272.3 651 36.4
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 4.8e-70 270.0 504 42.7
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 9.0e-69 265.8 479 43.4
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 5.9e-68 263.1 584 38.5
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.0e-67 262.3 432 45.4
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 6.5e-67 259.6 625 36.0
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 1.9e-66 258.1 626 36.4
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 1.0e-64 252.3 431 44.1
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 1.8e-64 251.5 586 38.7
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 5.7e-63 246.5 516 40.7
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 2.2e-62 244.6 430 44.0
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 4.8e-62 243.4 636 36.2
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 2.4e-61 241.1 633 34.8
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 4.1e-61 240.4 507 37.1
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 4.1e-61 240.4 647 35.7
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 9.1e-61 239.2 380 46.3
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 7.7e-60 236.1 368 45.9
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 1.1e-58 232.3 574 39.4
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 8.8e-56 222.6 365 44.7
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 5.7e-55 219.9 444 37.8
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 3.7e-54 217.2 426 39.0
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 1.8e-53 214.9 368 45.9
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 2.0e-52 211.5 336 45.5
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 3.2e-50 204.1 576 35.1
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 5.5e-50 203.4 506 34.2
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 1.2e-49 202.2 420 40.7
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 1.6e-49 201.8 362 44.5
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 2.1e-49 201.4 297 45.5
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 2.1e-49 201.4 316 45.3
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 1.0e-48 199.1 416 38.5
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 3.0e-48 197.6 288 44.8
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 3.0e-48 197.6 430 37.2
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 1.4e-45 188.7 472 36.2
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 3.1e-45 187.6 479 36.3
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 2.2e-43 181.4 449 34.7
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 7.2e-42 176.4 426 35.4
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 7.2e-42 176.4 579 32.5
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 1.2e-41 175.6 441 36.5
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 1.4e-40 172.2 471 33.5
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 8.8e-40 169.5 437 34.8
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 2.0e-39 168.3 329 38.6
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 9.8e-39 166.0 461 33.6
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 3.7e-38 164.1 381 36.0
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 1.4e-37 162.2 251 43.0
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 9.1e-37 159.5 364 37.6
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 1.6e-36 158.7 342 40.1
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 2.0e-36 158.3 354 37.3
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 7.7e-36 156.4 312 39.7
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 1.0e-35 156.0 447 34.5
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 1.3e-35 155.6 375 34.9
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 2.9e-35 154.5 297 38.4
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 3.2e-34 151.0 452 34.1
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 9.4e-34 149.4 413 36.3
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 2.3e-32 144.8 348 35.9
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 8.8e-32 142.9 285 39.6
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 1.5e-31 142.1 228 38.2
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 2.0e-31 141.7 290 39.0
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 3.4e-31 141.0 327 37.9
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 9.8e-31 139.4 219 48.9
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 4.9e-30 137.1 401 34.7
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 2.4e-29 134.8 392 32.4
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 2.7e-28 131.3 337 33.5
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 5.9e-28 130.2 413 33.7
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 8.6e-27 126.3 324 34.0
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 1.5e-26 125.6 343 33.5
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 4.3e-26 124.0 310 36.1
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 1.2e-25 122.5 239 39.7
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.6e-25 120.9 303 33.3
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 2.3e-24 118.2 515 29.1
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 2.3e-24 118.2 515 29.1
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 1.2e-23 115.9 517 30.9
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 1.2e-23 115.9 338 32.2
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.2e-23 115.9 329 31.9
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.4e-23 114.0 303 32.3
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 7.0e-21 106.7 377 30.2
Actinidia22764 Actinidia chinensis HOM05D006954 ORTHO05D008729 1.0e-19 102.8 379 28.8
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 5.0e-19 100.5 441 28.3
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 5.0e-19 100.5 409 30.1
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 6.6e-19 100.1 152 42.1
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 1.9e-18 98.6 214 31.8
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 1.2e-17 95.9 215 32.6
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 2.6e-15 88.2 400 29.2
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 1.7e-11 75.5 532 26.1
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 5.0e-11 73.9 171 32.2
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 1.5e-10 72.4 195 32.3
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 3.3e-10 71.2 482 26.1
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 1.2e-09 69.3 193 31.6
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 1.6e-09 68.9 169 30.8
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.6e-09 68.9 181 28.7
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 1.6e-09 68.9 408 27.9
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 4.7e-09 67.4 239 27.6
Lj6C70T8 Lonicera japonica HOM05D006954 ORTHO05D008729 1.4e-08 65.9 113 38.1
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.8e-08 65.5 181 26.5
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.8e-08 65.5 180 25.6
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 2.3e-08 65.1 186 26.3
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 3.1e-08 64.7 182 28.6
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 3.1e-08 64.7 184 28.8
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.1e-08 64.7 186 30.6
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 4.0e-08 64.3 181 28.2
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 5.2e-08 63.9 195 28.2
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 5.2e-08 63.9 185 28.1
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 5.2e-08 63.9 222 25.2
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 5.2e-08 63.9 183 28.4
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 1.2e-07 62.8 185 27.6
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 1.5e-07 62.4 187 28.3
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.5e-07 62.4 180 25.0
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 2.0e-07 62.0 181 27.6
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 2.6e-07 61.6 182 26.4
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 3.4e-07 61.2 188 27.7
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 4.4e-07 60.8 200 27.0
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 4.4e-07 60.8 185 27.6
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 4.4e-07 60.8 223 27.8
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 5.8e-07 60.5 184 27.2
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 5.8e-07 60.5 181 29.8
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 7.5e-07 60.1 190 26.3
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 1.3e-06 59.3 181 29.3
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.3e-06 59.3 182 26.9
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.2e-06 58.5 193 25.9
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 2.9e-06 58.2 181 28.2
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.9e-06 58.2 226 27.4
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 4.9e-06 57.4 183 26.8
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 4.9e-06 57.4 182 28.6
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 4.9e-06 57.4 183 25.7
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 4.9e-06 57.4 190 25.3
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 6.4e-06 57.0 192 27.1
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 6.4e-06 57.0 187 27.8
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 6.4e-06 57.0 209 23.9
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 6.4e-06 57.0 192 29.7
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 6.4e-06 57.0 181 28.2
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 8.3e-06 56.6 185 25.4


User provided reference genes

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