Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 4.8e-91 337.8 169 100.0
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 8.8e-77 290.4 167 84.4
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 5.3e-74 281.2 166 83.7
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 3.4e-73 278.5 169 82.8
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 4.5e-73 278.1 162 84.6
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 1.7e-72 276.2 167 81.4
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 1.4e-71 273.1 166 79.5
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 2.5e-71 272.3 166 80.1
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 1.2e-70 270.0 166 78.9
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 2.1e-70 269.2 166 78.9
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 3.6e-70 268.5 165 80.0
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 4.7e-70 268.1 165 80.0
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.0e-69 266.9 165 79.4
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 1.0e-69 266.9 167 79.6
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 3.9e-69 265.0 167 76.6
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 6.7e-69 264.2 166 77.7
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 6.7e-69 264.2 166 77.1
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 6.7e-69 264.2 164 80.5
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 8.8e-69 263.8 166 79.5
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 2.0e-68 262.7 166 79.5
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 4.4e-68 261.5 166 77.1
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 5.7e-68 261.2 166 74.7
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.3e-67 260.0 192 70.3
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 1.7e-67 259.6 166 75.3
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 2.8e-67 258.8 166 74.1
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 4.8e-67 258.1 166 75.3
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 4.8e-67 258.1 166 76.5
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.4e-66 256.5 166 73.5
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.8e-66 256.1 153 81.7
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 2.4e-66 255.8 162 76.5
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 3.1e-66 255.4 166 74.7
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 5.3e-66 254.6 166 74.7
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 7.0e-66 254.2 165 77.0
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 7.0e-66 254.2 166 75.3
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 7.0e-66 254.2 166 75.3
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 7.0e-66 254.2 166 75.3
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 7.0e-66 254.2 166 75.3
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 9.1e-66 253.8 162 74.7
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 9.1e-66 253.8 166 72.9
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 1.2e-65 253.4 166 73.5
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.5e-65 253.1 166 75.3
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.5e-65 253.1 166 74.7
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 1.5e-65 253.1 166 73.5
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 2.0e-65 252.7 166 74.1
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.6e-65 252.3 166 74.7
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 3.5e-65 251.9 166 74.1
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 5.9e-65 251.1 165 75.8
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 5.9e-65 251.1 166 74.7
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 1.0e-64 250.4 166 73.5
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.3e-64 250.0 166 72.3
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 1.7e-64 249.6 166 72.9
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 1.7e-64 249.6 166 74.7
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 3.8e-64 248.4 166 74.7
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 5.0e-64 248.1 167 71.3
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 1.1e-63 246.9 166 71.7
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.4e-63 246.5 168 72.6
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.9e-63 246.1 168 72.0
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.5e-63 245.7 168 72.0
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 5.5e-63 244.6 188 66.0
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 1.2e-62 243.4 203 64.5
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.6e-62 243.0 166 70.5
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 2.1e-62 242.7 166 71.7
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 2.7e-62 242.3 159 75.5
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 3.6e-62 241.9 166 72.3
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 3.6e-62 241.9 166 72.3
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 3.6e-62 241.9 166 72.3
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 4.7e-62 241.5 166 72.3
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 4.7e-62 241.5 163 73.6
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 1.5e-60 236.5 164 70.1
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.3e-60 235.3 190 64.2
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 3.3e-60 235.3 166 69.3
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 5.7e-60 234.6 166 69.3
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 3.7e-59 231.9 167 68.9
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 6.3e-59 231.1 162 69.8
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 6.3e-59 231.1 166 69.9
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 1.1e-58 230.3 162 69.8
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 3.1e-58 228.8 138 80.4
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 5.3e-58 228.0 154 73.4
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.5e-57 224.9 166 62.7
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 2.9e-56 222.2 166 61.4
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 5.0e-56 221.5 149 72.5
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 5.2e-53 211.5 139 71.9
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 4.4e-52 208.4 174 63.8
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 7.5e-52 207.6 160 61.9
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.7e-51 206.5 158 62.0
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 6.3e-51 204.5 137 69.3
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 8.3e-51 204.1 158 60.8
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 8.3e-51 204.1 122 82.0
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 2.4e-50 202.6 166 59.6
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 3.1e-50 202.2 136 68.4
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 3.1e-50 202.2 163 59.5
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.1e-50 201.8 190 56.3
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 5.3e-50 201.4 140 67.9
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 7.0e-50 201.1 158 60.8
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 2.0e-49 199.5 157 59.2
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 7.7e-49 197.6 150 59.3
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 7.7e-49 197.6 118 80.5
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 1.0e-48 197.2 150 59.3
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 1.3e-48 196.8 150 58.7
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 1.3e-48 196.8 150 58.7
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.3e-48 196.8 117 82.1
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 6.5e-48 194.5 137 65.7
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 8.5e-48 194.1 116 81.0
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 1.5e-47 193.4 160 56.9
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.5e-47 193.4 126 68.3
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.5e-47 192.6 162 54.9
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 3.2e-47 192.2 150 58.0
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.2e-47 191.8 162 54.9
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 9.4e-47 190.7 150 56.7
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.1e-46 189.5 128 71.1
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.1e-46 189.5 162 53.7
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.4e-45 186.8 162 53.1
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.2e-44 183.7 127 69.3
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 2.6e-44 182.6 160 51.9
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 3.4e-44 182.2 137 58.4
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 2.2e-43 179.5 116 75.0
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 7.0e-42 174.5 116 75.9
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 8.6e-40 167.5 116 70.7
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 7.2e-39 164.5 138 61.6
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.4e-34 148.3 154 49.4
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.2e-33 147.1 118 59.3
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 3.5e-33 145.6 103 66.0
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 5.9e-33 144.8 92 70.7
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 7.8e-33 144.4 166 45.8
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.3e-32 143.7 103 72.8
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.7e-32 143.3 166 46.4
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 5.0e-32 141.7 163 46.6
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.3e-29 132.9 122 50.8
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 2.6e-28 129.4 122 58.2
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 7.5e-28 127.9 128 57.0
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 2.9e-27 125.9 113 53.1
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 6.4e-27 124.8 74 78.4
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 1.1e-26 124.0 146 43.8
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.5e-23 113.6 166 42.8
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 1.9e-23 113.2 71 74.6
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.6e-22 110.2 102 49.0
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 2.1e-22 109.8 84 66.7
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 3.1e-21 105.9 75 61.3
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 3.1e-21 105.9 75 61.3
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 3.1e-21 105.9 75 61.3
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.5e-20 103.6 71 66.2
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 9.8e-20 100.9 166 41.0
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-19 100.5 160 38.1
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.3e-19 97.8 94 53.2
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.7e-16 90.1 52 73.1
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 7.3e-15 84.7 75 58.7
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 4.7e-14 82.0 59 64.4
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 1.1e-13 80.9 50 76.0
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 5.2e-13 78.6 49 75.5
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 5.2e-13 78.6 57 63.2
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 8.9e-13 77.8 75 57.3
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 9.9e-12 74.3 52 69.2
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.7e-11 73.6 54 66.7
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.2e-11 73.2 48 77.1
QL12p027355 Quercus lobata HOM05D001289 ORTHO05D002298 1.2e-06 57.4 34 76.5


User provided reference genes

Program Settings